genewise output Score 220.74 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info Sps2.Perkinsus_ 2 WDPTSLGLSKDFVLTSFSERK XG WDPT GL DF LT +S K WDPTVYGLPTDFRLTDYSTLK G:A[gcc] -- supercont1.927 1518 tgcagtgccagtctagtaacaGGTATGTA Intron 1 GAGCC gacctagtccatgtcaagcta <1-----[1582 : 2007]-1> gcccctcgattccaacttcaa Sps2.Perkinsus_ 26 CKVQPDQLSSFLPQIGDGNMLTEDSPDCSMVPVGDG CK+ +L+S+L IG G++ DCS++ CKIPQSELTSLLESIGSGDIRM----DCSILDTSIP supercont1.927 2010 taacctgtaactgtagaggaca gtaacgatac gatcacatcgttactgggatgt aggttacctc tgtagtgaccggattccccccg tcccgcacta Sps2.Perkinsus_ 62 RVLVSSTDFLSPISQDPFHQGWI V+VS+TDF P+ DP+ QG I E:G[ggt] VVMVSTTDFFYPLVDDPYTQGQI supercont1.927 2106 GGTATGTA Intron 2 CAGGTggagaaagtttccgggctacgca <1-----[2107 : 2586]-1> ttttgccattacttaacacagat tgggtagcccttagttcctaggc Sps2.Perkinsus_ 86 AAANTLSDLYAVGADDINNILMILTV A AN LSD+YAVGA ++N+LMIL ACANVLSDMYAVGARKVDNMLMILAS S:S[agc] supercont1.927 2658 gtgagttgatggggcaggaacaacgtAGGTATGTG Intron 3 cgcattcatactgcgataatttttcc <2-----[2738 : 3268] gtctagctgttgcacaaccgcgctac Sps2.Perkinsus_ 112 MKMSPLEQTVTTKKMIEGFNACCEEAGTK ++ +T+ T +M+ GFN C++AGTK TQIPASYRTIVTVEMVRGFNDWCKKAGTK supercont1.927 3266 TAGCacacgatcaagaggagcgtagttaaggaa -2> catccgagcttctattggtaaggaacgca tgcggctggaggtggtgacctgtgacgca Sps2.Perkinsus_ 142 VTGGQTVFNPWPLLGGCAMATMLQSQ VTGGQ+V+NPWP+LGG A++ ML + VTGGQSVMNPWPILGGVAQSVMLATD supercont1.927 3357 GTAAGTG Intron 4 TAGgaggcagaactcacggggctgatgag <0-----[3357 : 3883]-0>tcggagttacgcttggtcactttcca gttcgtggcggctgctgggcagaccc Sps2.Perkinsus_ 168 LVTTDRAVPGNVIVLTKPLGTQVTGNLALWMMNEAQWGKVVKAGLDVET ++T + A G+V+VLTKPLGTQ+ NL W +++ +W VK +D ET VITPENARAGDVMVLTKPLGTQLAVNLHQW-LDQPKWWDQVKHVIDAET supercont1.927 3962 gaacgagcggggagcaaccgaccggatcct cgccattgcgacgaggga ttccaacgcgattttcactgcatctataag taacaggaataattacac cctggcattgtcgagcacgccagtgcgcgg gcgcaggcgcgcgacggg Sps2.Perkinsus_ 217 CTRAVKMGDLSMM LNKNGCRLMR RA + SM LN G +LM VIRAYNVASASMK T:R[aga] LNMVGAQLMH supercont1.927 4106 gaagtaggtgtaaAGGTGGGTG Intron 5 CAGAcaagggccac ttgcaatccccta <2-----[4147 : 4592]-2> tattgcatta ccacctggtgcgg ccgggaaggc Sps2.Perkinsus_ 241 EFGALGATDVTGFGLVGHADNLARVQKSGASIEIDTVP + A ATDVTGFG++GHA+NLA+ QK+ ++ ID++P KHNARAATDVTGFGILGHANNLAQAQKAKLTLRIDSLP supercont1.927 4624 acagaggaggagtgatgcgaatgcgcagacacaagacc aaacgcccatcgtgttgacaatcacaacatctgtagtc acccggggtgcgcttgcccctgtatggcatcggaccaa Sps2.Perkinsus_ 279 IQGCKTLSMVRPNGRDYGLLEGR I+G + V G + L G T:V[gtc] IKGTIAVDRVLKGGALFNLATGY supercont1.927 4738 GGTGTGTG Intron 6 CAGTCaagaagggcgcagggctatgagt <1-----[4739 : 6075]-1> tagctctagttaggcttatccga cagcagccagcaagggtcgcgcc Sps2.Perkinsus_ 303 AAETSGGLLVMLRDKETAEKFIAALRA +AETSGGLL+ + + A+ F A+ A SAETSGGLLMCMAPAD-ADAFCRAIHA supercont1.927 6147 aggaaggccatagcgg gggttcgacg gcacgggtttgtccca cactggctac tcggctggcgcgaaac accccccacg // Making a A in phase 1 intron Making a G in phase 1 intron Making a S in phase 2 intron Making a R in phase 2 intron Making a V in phase 1 intron >supercont1.927.pep WDPTVYGLPTDFRLTDYSTLKACKIPQSELTSLLESIGSGDIRMDCSILDTSIPGVVMVS TTDFFYPLVDDPYTQGQIACANVLSDMYAVGARKVDNMLMILASSTQIPASYRTIVTVEM VRGFNDWCKKAGTKVTGGQSVMNPWPILGGVAQSVMLATDVITPENARAGDVMVLTKPLG TQLAVNLHQWLDQPKWWDQVKHVIDAETVIRAYNVASASMKRLNMVGAQLMHKHNARAAT DVTGFGILGHANNLAQAQKAKLTLRIDSLPVIKGTIAVDRVLKGGALFNLATGYSAETSG GLLMCMAPADADAFCRAIHA // >supercont1.927.[1518:6224].sp TGGGACCCCACCGTCTATGGCCTGCCAACTGATTTCCGCTTAACAGACTATAGTACCCTA AAAGCCTGTAAGATTCCACAGTCTGAGTTAACCAGCCTGTTGGAATCTATTGGCAGCGGC GACATCCGCATGGATTGCAGCATCCTGGACACATCCATTCCAGGTGTTGTGATGGTGAGT ACAACGGACTTCTTCTATCCTCTAGTGGATGATCCCTACACTCAAGGGCAGATCGCGTGT GCCAATGTATTGTCCGATATGTATGCTGTGGGCGCACGCAAAGTAGACAACATGCTCATG ATCCTTGCATCCAGCACTCAGATCCCGGCGAGCTATCGGACGATAGTGACGGTTGAGATG GTTCGGGGATTCAACGATTGGTGTAAGAAAGCCGGGACCAAAGTGACTGGTGGCCAGAGT GTGATGAACCCGTGGCCCATTCTGGGCGGTGTGGCGCAGTCCGTAATGTTAGCCACCGAC GTCATCACTCCGGAGAACGCACGTGCTGGGGATGTCATGGTACTGACCAAACCCCTGGGC ACCCAACTGGCTGTGAACTTGCACCAGTGGCTGGACCAGCCCAAATGGTGGGACCAGGTC AAGCACGTGATAGACGCGGAGACGGTCATCAGAGCCTACAATGTGGCGTCTGCGTCCATG AAGAGACTCAACATGGTGGGGGCACAACTGATGCACAAACACAACGCCAGGGCGGCGACG GATGTGACCGGGTTCGGTATTTTGGGCCACGCCAACAATTTGGCTCAAGCTCAGAAGGCC AAACTTACCCTGAGGATAGACAGCCTACCAGTCATCAAAGGGACCATAGCGGTCGACCGA GTGCTCAAAGGAGGGGCGCTGTTTAACTTGGCCACGGGCTACAGTGCCGAGACGAGCGGT GGGCTGCTCATGTGCATGGCACCAGCAGACGCAGACGCCTTCTGCCGCGCCATACACGCG // supercont1.927 GeneWise match 1518 6224 224.73 + . supercont1.927-genewise-prediction-1 supercont1.927 GeneWise cds 1518 1581 0.00 + 0 supercont1.927-genewise-prediction-1 supercont1.927 GeneWise intron 1582 2007 0.00 + . supercont1.927-genewise-prediction-1 supercont1.927 GeneWise cds 2008 2106 0.00 + 2 supercont1.927-genewise-prediction-1 supercont1.927 GeneWise intron 2107 2586 0.00 + . supercont1.927-genewise-prediction-1 supercont1.927 GeneWise cds 2587 2737 0.00 + 2 supercont1.927-genewise-prediction-1 supercont1.927 GeneWise intron 2738 3268 0.00 + . supercont1.927-genewise-prediction-1 supercont1.927 GeneWise cds 3269 3356 0.00 + 1 supercont1.927-genewise-prediction-1 supercont1.927 GeneWise intron 3357 3883 0.00 + . supercont1.927-genewise-prediction-1 supercont1.927 GeneWise cds 3884 4146 0.00 + 0 supercont1.927-genewise-prediction-1 supercont1.927 GeneWise intron 4147 4592 0.00 + . supercont1.927-genewise-prediction-1 supercont1.927 GeneWise cds 4593 4738 0.00 + 1 supercont1.927-genewise-prediction-1 supercont1.927 GeneWise intron 4739 6075 0.00 + . supercont1.927-genewise-prediction-1 supercont1.927 GeneWise cds 6076 6224 0.00 + 2 supercont1.927-genewise-prediction-1 //