genewise output
Score 262.23 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000033_1.0   38 FEPQALGLSPSWRLTGFSGMKGXGCKVPQEALLKLLAGLTRPDVRPPLG 
                     FEP  LGL   + LT ++ +KG  CK+PQ  LL LL    R    P    
                     FEPSQLGLPDEFILTDYARLKGCSCKLPQPELLALL---QRVSATP--- 
TcIL3000_10_v2.20000 tgctccgtcggtacagtgccagtataccccgccgcc   cagtgac    
                     taccatgtcaatttcaacgtaggggatcacattctt   agtcccc    
                     tgaggccggtgttatccggcgatccgaagtataata   aattcga    


SPP00000033_1.0   87 RGLVGGQEEASQEAGLPAGAGPSPTFPALGIGMDSCVIPLRH-----GG 
                          GQ++A                     GMD  ++ L+H        
                     -----GQKDA---------------------GMDCSIVKLQHKDESGNQ 
TcIL3000_10_v2.20129      gcagg                     gagtaagacccaggtgac 
                          gaaac                     gtaggttataaaaacgaa 
                          tagta                     cgcctcgagacgcgcgcg 


SPP00000033_1.0  131 LSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSV 
                     L +V TTDFF+P VEDPY++G+I  ANVLSDLY+ GI  CD +LMLL+  
                     LYMVSTTDFFFPSVEDPYLQGQIGAANVLSDLYSTGIYRCDTVLMLLAA 
TcIL3000_10_v2.20198 ctagtaagtttcagggcttcgcagggagttgctaagatctgagtaccgg 
                     tattcccatttcgtaacatagatgccattcatagcgtaggactttttcc 
                     tcgagatctttttgacacagaaatagctagtcctggttattccgggtgg 


SPP00000033_1.0  180 SQSMSEEEREKVTPLMVKGFRDAAEEGGTAVTGGQTVVNPWIIIGGVAT 
                     S  M + ER+  T  M+KGF D     G+ VTGGQTV+NPW +IGG+A  
                     STDMDKTERDICTREMMKGFVDHVRLAGSDVTGGQTVMNPWPLIGGIAM 
TcIL3000_10_v2.20345 aagagaagcgatacgaaagtggcgccggtggaggcagaactccaggaga 
                     gcataacagatgcgattagttaatgtcgcatcggacttacgcttggtct 
                     cctgtgtatcacatagggatgttcgtgggtagttagagcggattgtagg 


SPP00000033_1.0  229 VVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERW--NKV 
                      V   ++++ P     GD+LVLTKPLG Q+AVN  QW+  P      ++ 
                     SVVPESQMVRPTGLRPGDILVLTKPLGCQIAVNLKQWIHRPSPIYESRI 
TcIL3000_10_v2.20492 aggcgtcagacagcccggacgtaaccgtcaggacactacactcatgaaa 
                     gttcacattgccgtgcgattttcactggatctataagtagccctaaggt 
                     ttccgtagtgtctcctatttggggccatgctgccgggacactcctgtat 


SPP00000033_1.0  276 KMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILG 
                     +  +  EE++  Y  A   M  LNR AA LM    AH ATD+TGFGI+G 
                     QGKMDLEEIDELYCAAAEGMKRLNREAARLMCVHKAHGATDVTGFGIIG 
TcIL3000_10_v2.20639 cgaagcggaggcttgggggaaccacgggacatgcagcggaggagtgaag 
                     agatataataatagcccagtagtagaccgttgtaacagccatcgtgttg 
                     atagttagctagtttccgtggttctggaaggcgtgttaatcgatcctcg 


SPP00000033_1.0  325 HSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKA-SGRFGLLQGTSAETSG 
                     H+ NL   Q  ++ +V+++LP+       S+    +F L +G SAETSG 
                     HATNLGGAQEAKLCLVLNSLPMYKGAVKASRLMDDKFRLFEGYSAETSG 
TcIL3000_10_v2.20786 cgaacgggcggattcgcattcatagggagtacaggatcctggttggaag 
                     accatggcaacatgtttactctaagctaccgttaaatgttagaccacgg 
                     tcatttaaggcaaccgctgaggtagggggggggccatgttggcccggtg 


SPP00000033_1.0  373 GLLICLPREQAARFCSEIKSSKYGEGHQAWIVG--IVEKGNRTARIIDK 
                     GLL+       A     I+  +  +G  AW+VG  +    +  A +++K 
                     GLLVAFEDVTTAE--RYIRDLRDADGEPAWVVGRVVTRADDSPAAVLEK 
TcIL3000_10_v2.20933 gccggtgggaagg  ctacgccgggggcgtgggcggaagggtcgggcga 
                     gtttctaatccca  gatgatgacagaccgttggttcgcaaccccttaa 
                     tcccttgttagag  ccttccttgtgagtgagaaggagcttaatgtcaa 


SPP00000033_1.0  420 P-RVIEV                                           
                       ++IEV                                           
                     DYKIIEV                                           
TcIL3000_10_v2.21074 gtaaagg                                           
                     aaattat                                           
                     ttgttga                                           


//
>TcIL3000_10_v2.embl:subseq(2051891,50000).pep
FEPSQLGLPDEFILTDYARLKGCSCKLPQPELLALLQRVSATPGQKDAGMDCSIVKLQHK
DESGNQLYMVSTTDFFFPSVEDPYLQGQIGAANVLSDLYSTGIYRCDTVLMLLAASTDMD
KTERDICTREMMKGFVDHVRLAGSDVTGGQTVMNPWPLIGGIAMSVVPESQMVRPTGLRP
GDILVLTKPLGCQIAVNLKQWIHRPSPIYESRIQGKMDLEEIDELYCAAAEGMKRLNREA
ARLMCVHKAHGATDVTGFGIIGHATNLGGAQEAKLCLVLNSLPMYKGAVKASRLMDDKFR
LFEGYSAETSGGLLVAFEDVTTAERYIRDLRDADGEPAWVVGRVVTRADDSPAAVLEKDY
KIIEV
//
>TcIL3000_10_v2.embl:subseq(2051891,50000).[20000:21094].sp
TTTGAGCCATCGCAGCTCGGCTTGCCGGATGAGTTTATTCTAACTGACTACGCGCGGCTC
AAGGGATGTAGCTGCAAGCTACCACAGCCTGAACTTCTAGCACTTCTACAAAGAGTTTCT
GCCACGCCAGGTCAAAAGGATGCAGGCATGGACTGCAGTATCGTGAAACTGCAACACAAG
GACGAGTCCGGGAACCAGCTTTACATGGTATCGACAACTGACTTTTTTTTTCCTAGTGTG
GAAGACCCATACTTACAGGGACAAATAGGTGCAGCGAACGTTTTATCGGATCTCTACAGT
ACGGGGATTTATCGATGTGATACCGTCTTGATGCTGCTTGCGGCGAGCACCGATATGGAT
AAGACTGAACGTGACATATGCACACGTGAAATGATGAAGGGATTTGTGGATCATGTCCGG
CTTGCGGGGTCGGATGTAACGGGTGGTCAAACGGTAATGAACCCGTGGCCACTTATTGGG
GGTATAGCGATGAGTGTTGTCCCCGAGTCTCAAATGGTTAGGCCTACCGGTCTCCGCCCT
GGAGATATTCTTGTGTTGACGAAGCCCCTCGGATGTCAGATCGCTGTGAACCTCAAGCAG
TGGATACACAGACCCTCTCCCATCTATGAGAGTAGAATTCAAGGTAAAATGGATCTTGAA
GAGATCGATGAACTGTATTGTGCTGCCGCCGAGGGTATGAAGCGTCTTAACCGTGAGGCG
GCAAGACTGATGTGCGTGCATAAGGCTCATGGAGCAACTGACGTGACAGGTTTCGGCATT
ATCGGGCATGCCACAAATCTTGGTGGAGCACAGGAGGCCAAATTATGCCTCGTGCTCAAT
TCGTTACCGATGTATAAAGGGGCGGTGAAGGCGTCGAGGCTGATGGACGACAAATTTCGG
CTTTTTGAGGGGTACTCCGCCGAGACGAGTGGGGGTCTCCTCGTCGCTTTTGAGGATGTT
ACAACGGCAGAGCGCTACATTCGTGACCTCCGTGATGCGGATGGGGAACCGGCTTGGGTA
GTGGGACGAGTGGTGACAAGGGCCGATGATTCACCAGCTGCGGTTCTCGAAAAAGATTAT
AAGATTATTGAGGTA
//
TcIL3000_10_v2.embl:subseq(2051891,50000)	GeneWise	match	20000	21094	298.17	+	.	TcIL3000_10_v2.embl:subseq(2051891,50000)-genewise-prediction-1
TcIL3000_10_v2.embl:subseq(2051891,50000)	GeneWise	cds	20000	21094	0.00	+	0	TcIL3000_10_v2.embl:subseq(2051891,50000)-genewise-prediction-1
//