genewise output
Score 255.63 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000033_1.0  130 GLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLS 
                     G+ +V TTDFFYPLV+DPY +G+IACANVLSD+YA+G  + DNMLM+L+ 
                     GVVMVSTTDFFYPLVDDPYTQGQIACANVLSDMYAVGARKVDNMLMILA 
supercont1.927  2586 gggagaaagtttccgggctacgcagtgagttgatggggcaggaacaacg 
                     gttttgccattacttaacacagatcgcattcatactgcgataatttttc 
                     ttgggtagcccttagttcctaggcgtctagctgttgcacaaccgcgcta 


SPP00000033_1.0  179 V                          QSMSEEEREKVTPLMVKGFRDA 
                                                  +    R  VT  MV+GF D  
                     S           S:S[agc]       TQIPASYRTIVTVEMVRGFNDW 
supercont1.927  2733 tAGGTATGTG  Intron 1   TAGCacacgatcaagaggagcgtagt 
                     c  <2-----[2738 : 3268]-2> catccgagcttctattggtaag 
                     c                          tgcggctggaggtggtgacctg 


SPP00000033_1.0  203 AEEGGTA                       VTGGQTVVNPWIIIGGVAT 
                      ++ GT                        VTGGQ+V+NPW I+GGVA  
                     CKKAGTK                       VTGGQSVMNPWPILGGVAQ 
supercont1.927  3336 taaggaaGTAAGTG  Intron 2   TAGgaggcagaactcacggggc 
                     gaacgca<0-----[3357 : 3883]-0>tcggagttacgcttggtca 
                     tgacgca                       gttcgtggcggctgctggg 


SPP00000033_1.0  229 VVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKM 
                      V    + I P++A  GDV+VLTKPLGTQ+AVN HQWLD P+ W++VK  
                     SVMLATDVITPENARAGDVMVLTKPLGTQLAVNLHQWLDQPKWWDQVKH 
supercont1.927  3941 tgatgaggaacgagcggggagcaaccgaccggatcctcgccattgcgac 
                     ctttccattccaacgcgattttcactgcatctataagtaacaggaataa 
                     cagaccccctggcattgtcgagcacgccagtgcgcgggcgcaggcgcgc 


SPP00000033_1.0  278 VVSREEVELAYQEAMFNMA                          LNRT 
                     V+  E V  AY  A  +M                           LN   
                     VIDAETVIRAYNVASASMK           T:R[aga]       LNMV 
supercont1.927  4088 gagggagaagtaggtgtaaAGGTGGGTG  Intron 3   CAGAcaag 
                     ttacacttgcaatccccta  <2-----[4147 : 4592]-2> tatt 
                     gacgggccacctggtgcgg                          ccgg 


SPP00000033_1.0  302 AAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLP      
                      A LMH  NA AATD+TGFGILGH+ NLA+ Q+ ++++ I +LP      
                     GAQLMHKHNARAATDVTGFGILGHANNLAQAQKAKLTLRIDSLP      
supercont1.927  4606 ggccacacagaggaggagtgatgcgaatgcgcagacacaagacc      
                     gcattaaaacgcccatcgtgttgacaatcacaacatctgtagtc      
                     gaaggcacccggggtgcgcttgcccctgtatggcatcggaccaa      


SPP00000033_1.0  346                           IAKMAAVSKASGRFGLLQGTSAE 
                                                  +  V K    F L  G SAE 
                               I:G[ggg]        TIAVDRVLKGGALFNLATGYSAE 
supercont1.927  4738 GGTGTGTG  Intron 4   AAGGGaagggcgcagggctatgagtagg 
                      <1-----[4739 : 6084]-1>  ctctagttaggcttatccgagca 
                                               cagccagcaagggtcgcgcctcg 


SPP00000033_1.0  370 TSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGI             
                     TSGGLL+C+    A  FC  I +    EG +A++VG+             
                     TSGGLLMCMAPADADAFCRAIHAE---EGWKAFVVGM             
supercont1.927  6156 aaggccatagcgggggttcgacgg   ggtagtggga             
                     cgggtttgtcccacactggctaca   aggactttgt             
                     gctggcgcgaaacaccccccacgg   gcgagctctg             


//
Making a S in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>supercont1.927.pep
GVVMVSTTDFFYPLVDDPYTQGQIACANVLSDMYAVGARKVDNMLMILASSTQIPASYRT
IVTVEMVRGFNDWCKKAGTKVTGGQSVMNPWPILGGVAQSVMLATDVITPENARAGDVMV
LTKPLGTQLAVNLHQWLDQPKWWDQVKHVIDAETVIRAYNVASASMKRLNMVGAQLMHKH
NARAATDVTGFGILGHANNLAQAQKAKLTLRIDSLPGTIAVDRVLKGGALFNLATGYSAE
TSGGLLMCMAPADADAFCRAIHAEEGWKAFVVGM
//
>supercont1.927.[2586:6257].sp
GGTGTTGTGATGGTGAGTACAACGGACTTCTTCTATCCTCTAGTGGATGATCCCTACACT
CAAGGGCAGATCGCGTGTGCCAATGTATTGTCCGATATGTATGCTGTGGGCGCACGCAAA
GTAGACAACATGCTCATGATCCTTGCATCCAGCACTCAGATCCCGGCGAGCTATCGGACG
ATAGTGACGGTTGAGATGGTTCGGGGATTCAACGATTGGTGTAAGAAAGCCGGGACCAAA
GTGACTGGTGGCCAGAGTGTGATGAACCCGTGGCCCATTCTGGGCGGTGTGGCGCAGTCC
GTAATGTTAGCCACCGACGTCATCACTCCGGAGAACGCACGTGCTGGGGATGTCATGGTA
CTGACCAAACCCCTGGGCACCCAACTGGCTGTGAACTTGCACCAGTGGCTGGACCAGCCC
AAATGGTGGGACCAGGTCAAGCACGTGATAGACGCGGAGACGGTCATCAGAGCCTACAAT
GTGGCGTCTGCGTCCATGAAGAGACTCAACATGGTGGGGGCACAACTGATGCACAAACAC
AACGCCAGGGCGGCGACGGATGTGACCGGGTTCGGTATTTTGGGCCACGCCAACAATTTG
GCTCAAGCTCAGAAGGCCAAACTTACCCTGAGGATAGACAGCCTACCAGGGACCATAGCG
GTCGACCGAGTGCTCAAAGGAGGGGCGCTGTTTAACTTGGCCACGGGCTACAGTGCCGAG
ACGAGCGGTGGGCTGCTCATGTGCATGGCACCAGCAGACGCAGACGCCTTCTGCCGCGCC
ATACACGCGGAGGAGGGCTGGAAAGCGTTCGTTGTCGGTATG
//
supercont1.927	GeneWise	match	2586	6257	257.63	+	.	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	cds	2586	2737	0.00	+	0	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	intron	2738	3268	0.00	+	.	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	cds	3269	3356	0.00	+	1	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	intron	3357	3883	0.00	+	.	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	cds	3884	4146	0.00	+	0	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	intron	4147	4592	0.00	+	.	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	cds	4593	4738	0.00	+	1	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	intron	4739	6084	0.00	+	.	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	cds	6085	6257	0.00	+	2	supercont1.927-genewise-prediction-1
//