genewise output
Score 182.75 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000056_1.0   74 LFLVQSVDFFYPLIDDPFMLGKIALANVVSDVFAVGATEIDQIKLIVTA 
                     + +V + DFFYPL+DDP+  G+IA ANV+SD++AVGA ++D + +I+ + 
                     VVMVSTTDFFYPLVDDPYTQGQIACANVLSDMYAVGARKVDNMLMILAS 
supercont1.927  2589 ggagaaagtttccgggctacgcagtgagttgatggggcaggaacaacgt 
                     ttttgccattacttaacacagatcgcattcatactgcgataatttttcc 
                     tgggtagcccttagttcctaggcgtctagctgttgcacaaccgcgctac 


SPP00000056_1.0  123                           TEFTEQEREVVVPMVMQGFLEAA 
                                               T++    R +V   +++GF +   
                                P:S[agc]       TQIPASYRTIVTVEMVRGFNDWC 
supercont1.927  2736 AGGTATGTG  Intron 1   TAGCacacgatcaagaggagcgtagtt 
                       <2-----[2738 : 3268]-2> catccgagcttctattggtaagg 
                                               tgcggctggaggtggtgacctgt 


SPP00000056_1.0  147 KACNAP                       VQIGSIAENPWCVIGGAASA 
                     K                            V  G    NPW ++GG A + 
                     KKAGTK                       VTGGQSVMNPWPILGGVAQS 
supercont1.927  3339 aaggaaGTAAGTG  Intron 2   TAGgaggcagaactcacggggct 
                     aacgca<0-----[3357 : 3883]-0>tcggagttacgcttggtcac 
                     gacgca                       gttcgtggcggctgctgggc 


SPP00000056_1.0  173 VCHRSELIMPYNAQPGDALVLTKPLGTQLATNAYIWMGEQQSDSWAQLR 
                     V   +++I P NA+ GD +VLTKPLGTQLA N + W+   Q   W Q++ 
                     VMLATDVITPENARAGDVMVLTKPLGTQLAVNLHQWL--DQPKWWDQVK 
supercont1.927  3944 gatgaggaacgagcggggagcaaccgaccggatcctc  gccattgcga 
                     tttccattccaacgcgattttcactgcatctataagt  aacaggaata 
                     agaccccctggcattgtcgagcacgccagtgcgcggg  cgcaggcgcg 


SPP00000056_1.0  222 ERFTVADIEQTYRIALESMS                          LNK 
                       +    + + Y +A  SM                           LN  
                     HVIDAETVIRAYNVASASMK           R:R[aga]       LNM 
supercont1.927  4085 cgagggagaagtaggtgtaaAGGTGGGTG  Intron 3   CAGAcaa 
                     attacacttgcaatccccta  <2-----[4147 : 4592]-2> tat 
                     cgacgggccacctggtgcgg                          ccg 


SPP00000056_1.0  246 TGAELMKKYGAHAATDVTGFGLYGHAENLASHQTADVDFHLDTLP     
                      GA+LM K+ A AATDVTGFG+ GHA NLA  Q A + + +D+LP     
                     VGAQLMHKHNARAATDVTGFGILGHANNLAQAQKAKLTLRIDSLP     
supercont1.927  4603 gggccacacagaggaggagtgatgcgaatgcgcagacacaagacc     
                     tgcattaaaacgcccatcgtgttgacaatcacaacatctgtagtc     
                     ggaaggcacccggggtgcgcttgcccctgtatggcatcggaccaa     


SPP00000056_1.0  291                           IKNVREIAETLGRGA--KLLAGK 
                                               IK    +   L  GA   L  G  
                               I:V[gtc]        IKGTIAVDRVLKGGALFNLATGY 
supercont1.927  4738 GGTGTGTG  Intron 4   CAGTCaagaagggcgcagggctatgagt 
                      <1-----[4739 : 6075]-1>  tagctctagttaggcttatccga 
                                               cagcagccagcaagggtcgcgcc 


SPP00000056_1.0  313 AVETSGGLLICLPREAAAGFCEEYRRCTKHEAWIVG              
                     + ETSGGLL+C+    A  FC         +A++VG              
                     SAETSGGLLMCMAPADADAFCRAIHAEEGWKAFVVG              
supercont1.927  6147 aggaaggccatagcgggggttcgacggggtagtggg              
                     gcacgggtttgtcccacactggctacaaggactttg              
                     tcggctggcgcgaaacaccccccacgggcgagctct              


//
Making a S in phase 2 intron
Making a R in phase 2 intron
Making a V in phase 1 intron
>supercont1.927.pep
VVMVSTTDFFYPLVDDPYTQGQIACANVLSDMYAVGARKVDNMLMILASSTQIPASYRTI
VTVEMVRGFNDWCKKAGTKVTGGQSVMNPWPILGGVAQSVMLATDVITPENARAGDVMVL
TKPLGTQLAVNLHQWLDQPKWWDQVKHVIDAETVIRAYNVASASMKRLNMVGAQLMHKHN
ARAATDVTGFGILGHANNLAQAQKAKLTLRIDSLPVIKGTIAVDRVLKGGALFNLATGYS
AETSGGLLMCMAPADADAFCRAIHAEEGWKAFVVG
//
>supercont1.927.[2589:6254].sp
GTTGTGATGGTGAGTACAACGGACTTCTTCTATCCTCTAGTGGATGATCCCTACACTCAA
GGGCAGATCGCGTGTGCCAATGTATTGTCCGATATGTATGCTGTGGGCGCACGCAAAGTA
GACAACATGCTCATGATCCTTGCATCCAGCACTCAGATCCCGGCGAGCTATCGGACGATA
GTGACGGTTGAGATGGTTCGGGGATTCAACGATTGGTGTAAGAAAGCCGGGACCAAAGTG
ACTGGTGGCCAGAGTGTGATGAACCCGTGGCCCATTCTGGGCGGTGTGGCGCAGTCCGTA
ATGTTAGCCACCGACGTCATCACTCCGGAGAACGCACGTGCTGGGGATGTCATGGTACTG
ACCAAACCCCTGGGCACCCAACTGGCTGTGAACTTGCACCAGTGGCTGGACCAGCCCAAA
TGGTGGGACCAGGTCAAGCACGTGATAGACGCGGAGACGGTCATCAGAGCCTACAATGTG
GCGTCTGCGTCCATGAAGAGACTCAACATGGTGGGGGCACAACTGATGCACAAACACAAC
GCCAGGGCGGCGACGGATGTGACCGGGTTCGGTATTTTGGGCCACGCCAACAATTTGGCT
CAAGCTCAGAAGGCCAAACTTACCCTGAGGATAGACAGCCTACCAGTCATCAAAGGGACC
ATAGCGGTCGACCGAGTGCTCAAAGGAGGGGCGCTGTTTAACTTGGCCACGGGCTACAGT
GCCGAGACGAGCGGTGGGCTGCTCATGTGCATGGCACCAGCAGACGCAGACGCCTTCTGC
CGCGCCATACACGCGGAGGAGGGCTGGAAAGCGTTCGTTGTCGGT
//
supercont1.927	GeneWise	match	2589	6254	184.75	+	.	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	cds	2589	2737	0.00	+	0	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	intron	2738	3268	0.00	+	.	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	cds	3269	3356	0.00	+	1	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	intron	3357	3883	0.00	+	.	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	cds	3884	4146	0.00	+	0	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	intron	4147	4592	0.00	+	.	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	cds	4593	4738	0.00	+	1	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	intron	4739	6075	0.00	+	.	supercont1.927-genewise-prediction-1
supercont1.927	GeneWise	cds	6076	6254	0.00	+	2	supercont1.927-genewise-prediction-1
//