genewise output
Score 17.14 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000004_1.0  140 ATALMTDPKLITWSP                                   
                     AT+++  P +  WSP                                   
                     ATSVVVSPAVEAWSP                                   
T.congo.pschr.141282 gatgggtcggggttc                                   
                     ccctttccctacgcc                                   
                     aacggtcgacacgag                                   


//
>T.congo.pschr.11:subseq(4417211,50000).pep
ATSVVVSPAVEAWSP
//
>T.congo.pschr.11:subseq(4417211,50000).[41282:41326].sp
GCAACATCCGTGGTGGTTTCCCCGGCAGTCGAAGCCTGGTCACCG
//
T.congo.pschr.11:subseq(4417211,50000)	GeneWise	match	41282	41326	17.14	+	.	T.congo.pschr.11:subseq(4417211,50000)-genewise-prediction-1
T.congo.pschr.11:subseq(4417211,50000)	GeneWise	cds	41282	41326	0.00	+	0	T.congo.pschr.11:subseq(4417211,50000)-genewise-prediction-1
//

genewise output
Score 76.18 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000004_1.0   16 VYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQR 
                     V  FS   L  G PV L    G V +I N ASL      +   + ++QR 
                     VSVFSHLALMDGSPVPLAKYGGNVTIIVNTASLCSFAASNIRHLTQMQR 
T.congo.pschr.-20401 gtgttccgcaggacgctgatggagaaagaagtttatggtaacccacacc 
                     tcttcatcttaggctctcaaggatctttaccctggtcccatgatcatag 
                     ctatcttgggccctagacgcccccttcttatgacccgtgcacttggggc 


SPP00000004_1.0   65 RLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFE 
                       G RG  +L FPC+QF +QE    EEI +    V   G    NF +F+ 
                     SWGTRGFTILAFPCSQFANQEPKSAEEISS---WVASSG---INFPVFD 
T.congo.pschr.-20254 atgacgtaatgtctactgacgcaagggata   tggaag   aatcgtg 
                     gggcggtcttctcggatcaaacagcaatcg   gtcggg   tatctta 
                     cgtgatcataattccgtatgaggctgaatc   gggctg   accagcc 


SPP00000004_1.0  114 KCEVNGAGAHPLFAFLREAL                              
                     K +V+G  AHPLF  L+ +L                              
                     KVKVSGPDAHPLFKGLQSSL                              
T.congo.pschr.-20125 agagtgcggccctagccttt                              
                     atatcgcacacttagtacct                              
                     ggggggttccggtagagggg                              


//
>T.congo.pschr.11:subseq(4417211,50000).pep
VSVFSHLALMDGSPVPLAKYGGNVTIIVNTASLCSFAASNIRHLTQMQRSWGTRGFTILA
FPCSQFANQEPKSAEEISSWVASSGINFPVFDKVKVSGPDAHPLFKGLQSSL
//
>T.congo.pschr.11:subseq(4417211,50000).[20401:20064].sp
GTCTCTGTATTTTCCCATCTTGCGCTGATGGACGGCAGCCCTGTACCGTTAGCCAAGTAC
GGCGGCAACGTCACTATTATCGTTAATACAGCTTCGTTATGCAGCTTCGCGGCTTCGAAC
ATACGCCATCTTACGCAGATGCAGCGCAGCTGGGGTACGCGAGGTTTCACAATTTTAGCA
TTTCCTTGCAGCCAGTTTGCAAATCAGGAACCGAAGAGCGCTGAGGAAATATCTAGCTGG
GTGGCGAGCAGTGGGATAAACTTCCCAGTGTTCGACAAGGTGAAGGTGTCGGGGCCTGAT
GCCCACCCGCTGTTTAAAGGGCTACAGTCGTCGTTG
//
T.congo.pschr.11:subseq(4417211,50000)	GeneWise	match	20401	20066	80.17	-	.	T.congo.pschr.11:subseq(4417211,50000)-genewise-prediction-1
T.congo.pschr.11:subseq(4417211,50000)	GeneWise	cds	20401	20066	0.00	-	0	T.congo.pschr.11:subseq(4417211,50000)-genewise-prediction-1
//