genewise output
Score 14.48 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000004_1.0  175 PLRRYSR                                           
                     P+RRY R                                           
                     PVRRYGR                                           
supercont1.626:13350 cgactga                                           
                     ctggagg                                           
                     atggttg                                           


//
>supercont1.626:subseq(0,50000).pep
PVRRYGR
//
>supercont1.626:subseq(0,50000).[13350:13370].sp
CCAGTTAGGCGGTATGGTAGG
//
supercont1.626:subseq(0,50000)	GeneWise	match	13350	13370	14.48	+	.	supercont1.626:subseq(0,50000)-genewise-prediction-1
supercont1.626:subseq(0,50000)	GeneWise	cds	13350	13370	0.00	+	0	supercont1.626:subseq(0,50000)-genewise-prediction-1
//

genewise output
Score 50.38 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000004_1.0   12 AAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMN 
                     A Q+VY+F+ + + G E + + + +G V++  NVAS XG T  +YTQ+  
                     AYQNVYSFTHKSIDGDE-IPMETYKGNVIVAVNVASEXGLTKANYTQLE 
supercont1.626-17954 gtcagtttacaaagggg acagatagagagggaggagtgtaagataccg 
                     caaatactcaagtagaa tctacaagatttctatcgaggtcacaacata 
                     ttgcatgcacgcttcta ctgaacgatcctctcggcaatgcggttcgga 


SPP00000004_1.0   61 ELQRRLGPRGLVVLGFPCNQF                          HQ 
                      L R+   +GL +L FPCNQF                           Q 
                     ALDRQYRDKGLKILAFPCNQF          G:G[ggt]        GQ 
supercont1.626-17810 gcgcctcgagtaacgtctactGGTAAGTA  Intron 1   CAGGTgc 
                     ctagaagaagtattctcgaat <1-----[17746:15966]-1>  ga 
                     tgtaacttggggcctctccgt                          ga 


SPP00000004_1.0   85 ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR    
                     E   + EI    K+      F   F+LF K +VNG+ A P++ +++    
                     EPGSDAEIK---KFASK---FNVKFQLFSKIDVNGSSADPMWEYMK    
supercont1.626-15957 gcgtgggaa   atgaa   tagatccttaaggagatggcatgtaa    
                     acgcacata   atcga   tatatattcatataggccactgaata    
                     agaataacg   atcta   ctcgtggcagctgccttgtggggcgg    


//
Making a G in phase 1 intron
>supercont1.626:subseq(0,50000).pep
AYQNVYSFTHKSIDGDEIPMETYKGNVIVAVNVASEXGLTKANYTQLEALDRQYRDKGLK
ILAFPCNQFGGQEPGSDAEIKKFASKFNVKFQLFSKIDVNGSSADPMWEYMK
//
>supercont1.626:subseq(0,50000).[17954:15836].sp
GCTTATCAGAACGTATATTCGTTCACACACAAGAGCATTGATGGCGATGAAATCCCTATG
GAAACATACAAGGGAAATGTCATCGTTGCCGTTAACGTGGCGAGCGAATGAGGTTTGACC
AAGGCGAATTATACCCAGCTGGAAGCTCTGGATCGACAATACCGTGATAAGGGGTTGAAG
ATCCTCGCTTTCCCTTGCAACCAGTTTGGTGGGCAAGAACCGGGATCAGATGCAGAAATC
AAGAAATTTGCCAGTAAATTCAATGTCAAGTTTCAGCTGTTCTCAAAGATCGATGTGAAC
GGCAGTTCTGCGGATCCGATGTGGGAGTACATGAAG
//
supercont1.626:subseq(0,50000)	GeneWise	match	17954	15838	54.38	-	.	supercont1.626:subseq(0,50000)-genewise-prediction-1
supercont1.626:subseq(0,50000)	GeneWise	cds	17954	17747	0.00	-	0	supercont1.626:subseq(0,50000)-genewise-prediction-1
supercont1.626:subseq(0,50000)	GeneWise	intron	17746	15966	0.00	-	.	supercont1.626:subseq(0,50000)-genewise-prediction-1
supercont1.626:subseq(0,50000)	GeneWise	cds	15965	15838	0.00	-	2	supercont1.626:subseq(0,50000)-genewise-prediction-1
//