genewise output
Score 104.60 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000004_1.0   30 VSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPC 
                     V++   +GKV+L+ NV+S  G T  +Y ++ +L  +    GLVVLGFPC 
                     VNMEDYKGKVVLVVNVSSKCGLTPTNYPELQQLHEKYQEEGLVVLGFPC 
PHYCAscaffold_428464 gaaggtagaggcggagtaatgtacaatcgcccccgatcgggcggcgtct 
                     tataaaagatttttatcgaggtcccaacataataaaaaaagttttgtcg 
                     gtgaccgcggtggacgtcgctgcccccagggggtggcaaactgttacac 


SPP00000004_1.0   79 NQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFA 
                     NQF  QE   +EEI+  +K       +   F L+EK +VNG+ A P+F  
                     NQFAGQEPGTHEEIIEFVKQ------YNVTFPLLEKHDVNGSNARPVFT 
PHYCAscaffold_428611 actggcgcgacggaagtgac      tagatcctgacggagtagccgta 
                     aatcgaacgcaaattattaa      aatctcttaaaatagcacgcttc 
                     cgcgtggccacggccgcggg      ccggcgggggctgtcactcaccg 


SPP00000004_1.0  128 FLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPL 
                     +L+  LP                T+     N + WNF KFLV  +G P  
                     YLKAKLPG---------------TFG----NYIKWNFTKFLVDRNGEPF 
PHYCAscaffold_428740 tcagatcg               atg    ataatataatcggcaggct 
                     atacatcg               ctg    aatagatcatttagagact 
                     cgggggac               tcc    cccggtccactgccccagc 


SPP00000004_1.0  177 RRYSRRFQTIDIEPDIEALLSQGP                          
                     +RY+ +   + +E DI+ LL++ P                          
                     KRYAPKDLPLSFEEDIKELLAKAP                          
PHYCAscaffold_428830 actgcagcctttgggaagccgagc                          
                     agaccaatctctaaataattcacc                          
                     gttgggccggttggccggggcggt                          


//
>PHYCAscaffold_4:subseq(969931,50000).pep
VNMEDYKGKVVLVVNVSSKCGLTPTNYPELQQLHEKYQEEGLVVLGFPCNQFAGQEPGTH
EEIIEFVKQYNVTFPLLEKHDVNGSNARPVFTYLKAKLPGTFGNYIKWNFTKFLVDRNGE
PFKRYAPKDLPLSFEEDIKELLAKAP
//
>PHYCAscaffold_4:subseq(969931,50000).[28464:28901].sp
GTGAATATGGAAGACTACAAGGGCAAGGTGGTTCTGGTGGTAAACGTGTCTAGCAAGTGC
GGTTTGACCCCCACCAACTACCCAGAGCTGCAGCAGCTGCATGAGAAGTACCAAGAAGAA
GGCCTTGTGGTTCTTGGATTCCCATGCAACCAGTTCGCGGGTCAGGAGCCCGGCACACAC
GAGGAGATCATCGAGTTCGTGAAGCAGTACAACGTGACGTTCCCGCTGTTGGAGAAGCAC
GATGTGAATGGCTCAAACGCTCGCCCAGTCTTCACGTACCTGAAGGCGAAGTTGCCAGGC
ACTTTCGGCAACTACATCAAGTGGAATTTCACCAAATTCCTTGTGGACCGCAACGGCGAA
CCGTTCAAGCGTTATGCGCCGAAGGACCTCCCGTTGTCTTTTGAGGAGGACATCAAGGAG
CTGCTGGCCAAGGCGCCT
//
PHYCAscaffold_4:subseq(969931,50000)	GeneWise	match	28464	28901	126.56	+	.	PHYCAscaffold_4:subseq(969931,50000)-genewise-prediction-1
PHYCAscaffold_4:subseq(969931,50000)	GeneWise	cds	28464	28901	0.00	+	0	PHYCAscaffold_4:subseq(969931,50000)-genewise-prediction-1
//

genewise output
Score 17.60 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000004_1.0  148 KLITWSPVCRNDVAW                                   
                     K   WS +CR   +W                                   
                     KRARWSSICRLATSW                                   
PHYCAscaffold_-40898 acgctttatccgatt                                   
                     agcggcctggtcccg                                   
                     aggtgcactcaacgg                                   


//
>PHYCAscaffold_4:subseq(969931,50000).pep
KRARWSSICRLATSW
//
>PHYCAscaffold_4:subseq(969931,50000).[40898:40852].sp
AAACGGGCGCGTTGGTCCTCAATCTGTCGCCTAGCAACCTCGTGG
//
PHYCAscaffold_4:subseq(969931,50000)	GeneWise	match	40898	40854	17.60	-	.	PHYCAscaffold_4:subseq(969931,50000)-genewise-prediction-1
PHYCAscaffold_4:subseq(969931,50000)	GeneWise	cds	40898	40854	0.00	-	0	PHYCAscaffold_4:subseq(969931,50000)-genewise-prediction-1
//