genewise output
Score 18.92 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000004_1.0  142 ALMTDPKLITWSPVCRNDVAW                             
                     A+M +P   T SPV +N +A+                             
                     AIMLNPAAHTGSPVLQNSMAF                             
PHYCAscaffold_7 6148 gaatacggcagtcgtcatagt                             
                     ctttacccacgccttaactct                             
                     ccggccgatgagcgggcggtt                             


//
>PHYCAscaffold_71:subseq(88161,50000).pep
AIMLNPAAHTGSPVLQNSMAF
//
>PHYCAscaffold_71:subseq(88161,50000).[6148:6210].sp
GCCATCATGTTGAACCCCGCGGCACATACGGGATCGCCCGTGTTGCAGAACTCGATGGCT
TTT
//
PHYCAscaffold_71:subseq(88161,50000)	GeneWise	match	6148	6210	18.92	+	.	PHYCAscaffold_71:subseq(88161,50000)-genewise-prediction-1
PHYCAscaffold_71:subseq(88161,50000)	GeneWise	cds	6148	6210	0.00	+	0	PHYCAscaffold_71:subseq(88161,50000)-genewise-prediction-1
//

genewise output
Score 174.09 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000004_1.0    5 RLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTV 
                     R  +A    ++ + FS R L G + + L    GK +LI NVAS   +T  
                     RSGSAPRRGKTAHNFSFRSLIGSKFIRLADYAGKPILIVNVASHCNSTT 
PHYCAscaffold_-20670 ctgtgcccgaagcatttctcagtataccggtggacacagaggtctataa 
                     gcgcccgggaccaatctgcttgcattgtcaacgacttttatccagaccc 
                     tacgtttgggggcccgctgctccactcggccctactgtgcgggtccccc 


SPP00000004_1.0   54 RDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPG 
                     + Y Q+N+L +R  P  LV++G PCNQFGHQEN   EEI  SL+++RPG 
                     KAYVQLNDLAKRF-PE-LVIIGCPCNQFGHQENLNGEEIYQSLRHIRPG 
PHYCAscaffold_-20523 agtgccagcgact cg cgaagtctactgccgacagggatcacacaccg 
                     acatataatcagt ca ttttggcgaatgaaaatagaataagtgatgcg 
                     gccgggccgcgcc tg ctttctgctactcggtatagactgtgactccc 


SPP00000004_1.0  103 GGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSD--------DATAL 
                      GFEP FML EK EVNGA AH LF FLR  LP P D          + + 
                     KGFEPVFMLTEKVEVNGANAHALFNFLRITLPYPCDRTLLDEMSTPSGV 
PHYCAscaffold_-20382 agtgcgtacagagggaggagcgctatcaaacctctgcaccggatacagg 
                     agtacttttcaatatagcacacttattgtctcacgagcttaatcccggt 
                     gctagccgcgggtgctaccgtggcccgatagtcgcttgtgcggcgcccc 


SPP00000004_1.0  144 MTDPKLITWSPVCRNDVAWNFEK                       FLV 
                     ++ P  + W PV R DV+WNFEK                       FL+ 
                     FSHPMRLIWMPVTRADVSWNFEK                       FLI 
PHYCAscaffold_-20235 ttccaccatacgacgggatatgaGTATGTG  Intron 1   CAGtca 
                     tcactgttgtctcgcatggataa<0-----[20166:20090]-0>ttt 
                     cacggtctggtcgcatccgccgg                       cgc 


SPP00000004_1.0  170 GPDGVPLRRYSRRFQTIDIEPDIEALL                       
                      PDG P +RYS ++    +  DI+ LL                       
                     SPDGTPYKRYSPKLDFTSMIEDIKFLL                       
PHYCAscaffold_-20080 acggactactacacgtataaggaatcc                       
                     gcagccaagagcatatccttaatattt                       
                     tttccgcgccccggccccgcaccacgg                       


//
>PHYCAscaffold_71:subseq(88161,50000).pep
RSGSAPRRGKTAHNFSFRSLIGSKFIRLADYAGKPILIVNVASHCNSTTKAYVQLNDLAK
RFPELVIIGCPCNQFGHQENLNGEEIYQSLRHIRPGKGFEPVFMLTEKVEVNGANAHALF
NFLRITLPYPCDRTLLDEMSTPSGVFSHPMRLIWMPVTRADVSWNFEKFLISPDGTPYKR
YSPKLDFTSMIEDIKFLL
//
>PHYCAscaffold_71:subseq(88161,50000).[20670:19998].sp
CGTTCAGGCTCGGCTCCTCGTCGGGGGAAGACGGCGCACAACTTCTCGTTCCGTTCGCTC
ATTGGCTCCAAATTCATTCGCCTGGCGGACTACGCCGGTAAACCCATTCTGATTGTGAAC
GTGGCGTCGCATTGCAACTCCACCACCAAGGCCTACGTGCAGCTGAACGACCTGGCCAAG
CGCTTCCCTGAGCTCGTTATTATTGGCTGTCCGTGCAATCAATTCGGTCACCAGGAGAAT
CTAAATGGAGAGGAAATCTATCAGAGTCTGAGACACATTCGCCCCGGCAAGGGCTTTGAA
CCGGTCTTCATGCTCACGGAGAAGGTTGAGGTCAATGGAGCCAACGCGCATGCGCTGTTC
AACTTCCTGAGAATTACACTGCCTTACCCGTGCGATCGTACGCTTCTGGACGAGATGTCC
ACGCCCAGCGGCGTCTTCTCACACCCGATGCGTCTCATTTGGATGCCTGTCACGCGCGCA
GATGTCAGCTGGAACTTCGAGAAGTTCCTGATCAGTCCTGATGGCACCCCGTACAAGCGC
TACAGCCCCAAGCTGGACTTCACCTCCATGATCGAAGACATCAAATTCCTGCTG
//
PHYCAscaffold_71:subseq(88161,50000)	GeneWise	match	20670	20000	181.08	-	.	PHYCAscaffold_71:subseq(88161,50000)-genewise-prediction-1
PHYCAscaffold_71:subseq(88161,50000)	GeneWise	cds	20670	20167	0.00	-	0	PHYCAscaffold_71:subseq(88161,50000)-genewise-prediction-1
PHYCAscaffold_71:subseq(88161,50000)	GeneWise	intron	20166	20090	0.00	-	.	PHYCAscaffold_71:subseq(88161,50000)-genewise-prediction-1
PHYCAscaffold_71:subseq(88161,50000)	GeneWise	cds	20089	20000	0.00	-	0	PHYCAscaffold_71:subseq(88161,50000)-genewise-prediction-1
//