TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Homo sapiens # Complete
         (203 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr.11                                                       80   5e-16
T.                                                                     27   9.1  

>T.congo.pschr.11
          Length = 4797796

 Score = 80.5 bits (197), Expect = 5e-16
 Identities = 52/164 (31%), Positives = 74/164 (45%)
 Frame = -2

Query: 16      VYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLG 75
               V  FS   L  G PV L    G V +I N ASL      +   + ++QR  G RG  +L 
Sbjct: 4437612 VSVFSHLALMDGSPVPLAKYGGNVTIIVNTASLCSFAASNIRHLTQMQRSWGTRGFTILA 4437433

Query: 76      FPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPA 135
               FPC+QF +QE    EEI +   +V   G    NF +F+K +V+G  AHPLF  L+ +L  
Sbjct: 4437432 FPCSQFANQEPKSAEEISS---WVASSG---INFPVFDKVKVSGPDAHPLFKGLQSSL-- 4437277

Query: 136     PSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRY 179
                                       + WN+ KF+    G+P  ++
Sbjct: 4437276 ----------------------GPIRWNYTKFVCSRAGMPYAKF 4437211


>T.
          Length = 839999

 Score = 26.6 bits (57), Expect = 9.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 135    APSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRF 183
              +PS  A A  T P L +W+P C    A++  +        P   +S RF
Sbjct: 200310 SPSKSARAFSTLPFLYSWTPRCTTVTAYSSRR------RAPFMSFSTRF 200182


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.321    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,664,155
Number of Sequences: 11
Number of extensions: 88652
Number of successful extensions: 353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 76
length of query: 203
length of database: 7,429,315
effective HSP length: 93
effective length of query: 110
effective length of database: 7,428,292
effective search space: 817112120
effective search space used: 817112120
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)