TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Homo sapiens # Complete
         (203 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.626 of Sphaeroforma arctica JP610                           60   5e-09
supercont1.676 of Sphaeroforma arctica JP610                           29   8.7  

>supercont1.626 of Sphaeroforma arctica JP610
          Length = 54852

 Score = 59.7 bits (143), Expect = 5e-09
 Identities = 30/71 (42%), Positives = 46/71 (64%)
 Frame = -2

Query: 12    AAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGL 71
             A Q+VY+F+ + + G E + + + +G V++  NVAS  G T  +YTQ+  L R+   +GL
Sbjct: 17954 AYQNVYSFTHKSIDGDE-IPMETYKGNVIVAVNVASE*GLTKANYTQLEALDRQYRDKGL 17778

Query: 72    VVLGFPCNQFG 82
              +L FPCNQFG
Sbjct: 17777 KILAFPCNQFG 17745


>supercont1.676 of Sphaeroforma arctica JP610
          Length = 50765

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = -3

Query: 142   ALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRR-----YSRRFQTIDIEPDIEALL 196
             A + +   + W P+ + +  +NF   LV P  VP+ R     Y  +   ++   DIE+ L
Sbjct: 35016 AKLIESSSLRWVPLQQYNSEYNFNPLLVVPMHVPIYR*VCEAYGGKGFLVEKHEDIESTL 34837

Query: 197   SQGPSCA 203
             +Q    A
Sbjct: 34836 AQAKEAA 34816


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.321    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,517,078
Number of Sequences: 15618
Number of extensions: 370857
Number of successful extensions: 1458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 1230
length of query: 203
length of database: 40,529,447
effective HSP length: 104
effective length of query: 99
effective length of database: 38,905,175
effective search space: 3851612325
effective search space used: 3851612325
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)