TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete (203 letters) Database: P.capsici/genome.fa 917 sequences; 64,023,748 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PHYCAscaffold_71 150 4e-40 PHYCAscaffold_4 109 2e-24 PHYCAscaffold_3 107 1e-23 PHYCAscaffold_1 46 2e-12 PHYCAscaffold_77 46 4e-05 PHYCAscaffold_11 31 0.99 PHYCAscaffold_402 31 1.3 PHYCAscaffold_7 31 1.3 PHYCAscaffold_47 30 2.9 PHYCAscaffold_93 29 4.9 PHYCAscaffold_8 29 4.9 >PHYCAscaffold_71 Length = 252329 Score = 150 bits (380), Expect(2) = 4e-40 Identities = 81/173 (46%), Positives = 103/173 (59%), Gaps = 8/173 (4%) Frame = -3 Query: 5 RLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQR 64 R +A ++ + FS R L G + + L GK +LI NVAS +T + Y Q+N+L + Sbjct: 108831 RSGSAPRRGKTAHNFSFRSLIGSKFIRLADYAGKPILIVNVASHCNSTTKAYVQLNDLAK 108652 Query: 65 RLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHP 124 R LV++G PCNQFGHQEN EEI SL+++RPG GFEP FML EK EVNGA AH Sbjct: 108651 RFPE--LVIIGCPCNQFGHQENLNGEEIYQSLRHIRPGKGFEPVFMLTEKVEVNGANAHA 108478 Query: 125 LFAFLREALPAPSD--------DATALMTDPKLITWSPVCRNDVAWNFEKFLV 169 LF FLR LP P D + + + P + W PV R DV+WNFEK V Sbjct: 108477 LFNFLRITLPYPCDRTLLDEMSTPSGVFSHPMRLIWMPVTRADVSWNFEKVCV 108319 Score = 32.3 bits (72), Expect(2) = 4e-40 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -2 Query: 164 FEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 196 F +FL+ PDG P +RYS + + DI+ LL Sbjct: 108259 FVQFLISPDGTPYKRYSPKLDFTSMIEDIKFLL 108161 >PHYCAscaffold_4 Length = 1587695 Score = 109 bits (273), Expect = 2e-24 Identities = 67/192 (34%), Positives = 98/192 (51%) Frame = +1 Query: 9 AAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGP 68 AA A+S Y + E V++ +GKV+L+ NV+S G T +Y ++ +L + Sbjct: 998335 AAEEAKSFYELKDFDMDKKE-VNMEDYKGKVVLVVNVSSKCGLTPTNYPELQQLHEKYQE 998511 Query: 69 RGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAF 128 GLVVLGFPCNQF QE +EEI+ +K + F L EK +VNG+ A P+F + Sbjct: 998512 EGLVVLGFPCNQFAGQEPGTHEEIIEFVKQ------YNVTFPLLEKHDVNGSNARPVFTY 998673 Query: 129 LREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDI 188 L+ LP N + WNF KFLV +G P +RY+ + + Sbjct: 998674 LKAKLPG-------------------TFGNYIKWNFTKFLVDRNGEPFKRYAPKDLPLSF 998796 Query: 189 EPDIEALLSQGP 200 E DI+ LL++ P Sbjct: 998797 EEDIKELLAKAP 998832 Score = 63.9 bits (154), Expect = 1e-10 Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 3/190 (1%) Frame = +1 Query: 10 AAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNEL---QRRL 66 A ++ S+Y+ + A G L LRG V L+ NVA+ G+ D Q++EL Sbjct: 1000354 AVSSVSLYSLTDTD-ASGNTFCLSELRGHVSLLTNVAN--GSCNIDAKQLHELADLSTTY 1000524 Query: 67 GPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLF 126 GL+V+ FP QFG E +E+++ + + F+ F + +VNG A Sbjct: 1000525 RDAGLMVVAFPSAQFGDAEFDTDEQLVEHFQEL-----FDVRFPVMATRDVNGPNARDAM 1000689 Query: 127 AFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTI 186 F + LP + A + NF KFLVG DG +RY + Sbjct: 1000690 LFCKTRLPGSAPSAANAFIEN---------------NFVKFLVGRDGRLFKRYGPNDLPL 1000824 Query: 187 DIEPDIEALL 196 +E DI+ LL Sbjct: 1000825 SMETDIQGLL 1000854 Score = 63.5 bits (153), Expect(2) = 7e-19 Identities = 35/87 (40%), Positives = 48/87 (55%) Frame = +3 Query: 11 AAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRG 70 A S Y +AG E VS+ +GKV+L NV+S G T +Y ++ +L + G Sbjct: 989931 AKINSFYELKDFDMAGNE-VSMSKYKGKVVLAVNVSSKCGLTPTNYPELQQLYEKYKDEG 990107 Query: 71 LVVLGFPCNQFGHQENAKNEEILNSLK 97 L VL FPCNQF QE +EEI+ +K Sbjct: 990108 LEVLAFPCNQFADQEPGTHEEIMEFVK 990188 Score = 48.1 bits (113), Expect(2) = 7e-19 Identities = 28/85 (32%), Positives = 41/85 (48%) Frame = +2 Query: 117 VNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPL 176 VNGA A P+F +L+ LP D V WNF KFLV +G P Sbjct: 990218 VNGATARPVFTYLKTKLPGSFGDF-------------------VKWNFTKFLVDRNGQPY 990340 Query: 177 RRYSRRFQTIDIEPDIEALLSQGPS 201 +R++ + + + E DI+ LL++ S Sbjct: 990341 KRFAPKDRPLSFEEDIKTLLAEESS 990415 >PHYCAscaffold_3 Length = 1611504 Score = 107 bits (267), Expect = 1e-23 Identities = 66/188 (35%), Positives = 94/188 (50%) Frame = -1 Query: 11 AAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRG 70 A +S Y +AG E V + +GKV+L NV+S G T +Y ++ +L + G Sbjct: 1018119 AKIKSFYELKDFDMAGNE-VPMSKYKGKVVLAVNVSSKCGLTPTNYPELQQLYEKYKDEG 1017943 Query: 71 LVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 130 L VL FPCNQF QE +EEI+ +K + F FEK +VNGA A P+F +L+ Sbjct: 1017942 LEVLAFPCNQFAGQEPGTHEEIMEFVKQ------YNVTFPFFEKHDVNGASARPVFTYLK 1017781 Query: 131 EALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEP 190 LP D V WNF KFLV +G P +R++ + + + E Sbjct: 1017780 TKLPGSFGDF-------------------VKWNFTKFLVDRNGQPYKRFAPKDRPLSFEE 1017658 Query: 191 DIEALLSQ 198 DI+ LL+Q Sbjct: 1017657 DIKTLLAQ 1017634 >PHYCAscaffold_1 Length = 2170955 Score = 45.8 bits (107), Expect(2) = 2e-12 Identities = 29/77 (37%), Positives = 38/77 (49%) Frame = +1 Query: 116 EVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVP 175 +VNG AHPLF FL++ L IT ND+ WNF KFL+ + P Sbjct: 172045 DVNGENAHPLFRFLKKQLDG-------------FIT------NDIKWNFTKFLI-VNHEP 172164 Query: 176 LRRYSRRFQTIDIEPDI 192 L+RY ++IE DI Sbjct: 172165 LKRYGTTTSPLEIEDDI 172215 Score = 44.3 bits (103), Expect(2) = 2e-12 Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 23/111 (20%) Frame = +3 Query: 6 LAAAAAAAQSVYAFSARPLAGGEPVSLGSLRG-KVLLIENVASLXGTTVRDYTQMN---- 60 LAA S F+ L G + VS+ + V+L+ NVAS G T ++Y ++ Sbjct: 171612 LAAPDGEPTSFLDFTVPDLQGRQ-VSMRAFNAFPVILVVNVASECGYTDKNYRELQVRRK 171788 Query: 61 ------------------ELQRRLGPRGLVVLGFPCNQFGHQENAKNEEIL 93 EL + G VLGFPCNQFG QE E+IL Sbjct: 171789 LIQHYALLFNWGFR*NSQELYEKYHDEGFTVLGFPCNQFGGQEPGTAEDIL 171941 >PHYCAscaffold_77 Length = 232015 Score = 45.8 bits (107), Expect = 4e-05 Identities = 37/136 (27%), Positives = 51/136 (37%) Frame = -2 Query: 38 KVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 97 KV L+ N AS T Q+ L + +GL+V+ P N F QE ++++L Sbjct: 56616 KVALVVNTASKC-THAGQLKQLQTLHEKYSEKGLIVVAVPSNDFARQEPGDSDDVLKRY- 56443 Query: 98 YVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCR 157 F F + K V G AHP F + D + P Sbjct: 56442 -----ADFGVTFAIANKTPVTGTDAHPFFKRIA--------DKYSTSVAP---------- 56332 Query: 158 NDVAWNFEKFLVGPDG 173 WNF+KFLV G Sbjct: 56331 ---TWNFDKFLVDHRG 56293 >PHYCAscaffold_11 Length = 1076090 Score = 31.2 bits (69), Expect = 0.99 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = +1 Query: 162 WNFEKFLVGPDGVPLRRYSRRFQTIDI--EPDIEALLSQGPSC 202 WN LV P+G+ L RYS RF T + + ++ Q P+C Sbjct: 585070 WNVAGALVRPNGILLNRYSPRFVTNAVLSRSSLATVICQYPAC 585198 >PHYCAscaffold_402 Length = 4968 Score = 30.8 bits (68), Expect = 1.3 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = +3 Query: 162 WNFEKFLVGPDGVPLRRYSRRFQTIDI--EPDIEALLSQGPSC 202 WN LV P+G+ L RYS RF T + + ++ Q P+C Sbjct: 3666 WNVAGALVRPNGILLNRYSPRFVTNAVLSRSPLATVICQYPAC 3794 >PHYCAscaffold_7 Length = 1368812 Score = 30.8 bits (68), Expect = 1.3 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = -1 Query: 162 WNFEKFLVGPDGVPLRRYSRRFQTIDI--EPDIEALLSQGPSC 202 WN LV P+G+ L RYS RF T + + ++ Q P+C Sbjct: 919364 WNVAGALVRPNGILLNRYSPRFVTNAVLSRSPLATVICQYPAC 919236 >PHYCAscaffold_47 Length = 556112 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -2 Query: 147 PKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQT 185 P L+ W CR W+F++ P VP +R S ++ T Sbjct: 42013 PHLLEWWRHCRRSAGWHFQRETEIPRTVPSQRRSSQWPT 41897 >PHYCAscaffold_93 Length = 150113 Score = 28.9 bits (63), Expect = 4.9 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Frame = +3 Query: 19 FSARPLAGGEPVSLGSLRGKVLLIENVAS---LXGTTVRDYTQMNELQRRLGPRGLVVLG 75 FS +GG +S+GSL G + + S + G T+ + ++ +G +GLV Sbjct: 100848 FSNNYCSGGHGISIGSLGGSTVSSSDTVSGLTVSGNTIVNSVNGIRIKTIIGLKGLVSNA 101027 Query: 76 FPCNQFGHQENAKNEEILNSLKYVRPGGGF 105 N N KN +L+S Y + GG+ Sbjct: 101028 KYTN--NKLSNVKNAIVLHS-DYSKSKGGY 101108 Score = 28.1 bits (61), Expect = 8.4 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Frame = -2 Query: 19 FSARPLAGGEPVSLGSLRGKVLLIENVAS---LXGTTVRDYTQMNELQRRLGPRGLVVLG 75 FS +GG +S+GSL G + + S + G T+ + ++ +G GLV Sbjct: 96928 FSNNYCSGGHGISIGSLGGSTVSSSDTVSGLTVSGNTIVNSVNGIRIKTIIGLEGLVSNA 96749 Query: 76 FPCNQFGHQENAKNEEILNSLKYVRPGGGF 105 N N KN +L+S Y + GG+ Sbjct: 96748 KYTN--NKLSNVKNAIVLHS-DYSKSKGGY 96668 Score = 28.1 bits (61), Expect = 8.4 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Frame = -1 Query: 19 FSARPLAGGEPVSLGSLRGKVLLIENVA---SLXGTTVRDYTQMNELQRRLGPRGLVVLG 75 FS +GG VS+GSL G + + S+ G T+ + ++ +G +GLV Sbjct: 94610 FSNNYCSGGHGVSIGSLGGDSVTSSDTVSGLSVTGNTIVNSVNGIRIKTIIGLQGLVSNA 94431 Query: 76 FPCNQFGHQENAKNEEILNSLKYVRPGGGF 105 N +N KN +++S Y + GG+ Sbjct: 94430 KYTN--NKLQNVKNAIVIHS-DYSKSKGGY 94350 >PHYCAscaffold_8 Length = 1194346 Score = 28.9 bits (63), Expect = 4.9 Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Frame = +1 Query: 11 AAAQSVYAFSARPLAGGEPVSLGSLRGKV--LLIENVA-------SLXGTTVRDYTQMNE 61 A V S R +A G PV L L G V L++ N A T VR + Sbjct: 819082 ARGNRVKHISKRLVARGLPV-LSKLLGVVHRLVVVNAAVEPFVHAGTSKTVVRRVDGVG- 819255 Query: 62 LQRRLGPRGLVVLGFPCNQFGHQENAKNEEILN 94 L RRLGPR + V Q GH E + E L+ Sbjct: 819256 LVRRLGPRNVAVCMRTAYQHGHCEGTRRSESLH 819354 Database: P.capsici/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 64,023,748 Number of sequences in database: 917 Lambda K H 0.321 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,093,866 Number of Sequences: 917 Number of extensions: 253121 Number of successful extensions: 1130 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 23 Number of HSP's that attempted gapping in prelim test: 869 Number of HSP's gapped (non-prelim): 495 length of query: 203 length of database: 21,341,249 effective HSP length: 100 effective length of query: 103 effective length of database: 21,249,549 effective search space: 2188703547 effective search space used: 2188703547 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.7 bits)