TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete (203 letters) Database: L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig5959 | | 1 to 3760 86 2e-17 Lt_contig571 | | 1 to 18851 73 1e-13 Lt_contig1507 | | 1 to 8331 28 5.3 Lt_contig241 | | 1 to 2390 28 5.3 Lt_contig5436 | | 1 to 1189 27 7.0 Lt_contig7115 | | 1 to 6655 27 7.0 Lt_contig6391 | | 1 to 3420 27 7.0 Lt_contig1064 | | 1 to 19894 27 7.0 >Lt_contig5959 | | 1 to 3760 Length = 3760 Score = 85.9 bits (211), Expect = 2e-17 Identities = 67/197 (34%), Positives = 84/197 (42%) Frame = +1 Query: 5 RLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQR 64 R AAA+ A S+Y F + +P LG +G LLI NVAS G T Y L Sbjct: 1687 RHAAASVQASSIYDFKVNG-SDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYN 1863 Query: 65 RLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHP 124 + RG VL FPCNQF QE EE+ R F+ F + EK VNG HP Sbjct: 1864 KYKHRGFTVLAFPCNQFAGQEPGTEEEV-KEFACTR----FKAEFPIMEKICVNGDKEHP 2028 Query: 125 LFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQ 184 L+ +L+ T L V WNF FLV DG + R+S Sbjct: 2029 LYHYLKNTCKGVL--GTTL----------------VKWNFTAFLVDKDGHAVHRFSPGAT 2154 Query: 185 TIDIEPDIEALLSQGPS 201 +IE ++ LL S Sbjct: 2155 MAEIEKELVPLLQASGS 2205 >Lt_contig571 | | 1 to 18851 Length = 18851 Score = 72.8 bits (177), Expect = 1e-13 Identities = 54/186 (29%), Positives = 79/186 (42%) Frame = +1 Query: 11 AAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRG 70 A S++++SA + G+ + L G LI NVAS + +NE+Q+ GPR Sbjct: 10777 AGMTSIFSYSA--VQNGKTILLQKYSGYATLIVNVASRCSLASVNIEMLNEVQQVYGPRR 10950 Query: 71 LVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 130 VL FPC QF +QE N EI+ + F +F++ V G+ A PLF LR Sbjct: 10951 FTVLAFPCAQFANQEPLSNTEIVQWCE------DLGLLFPVFDRVNVKGSSADPLFQMLR 11112 Query: 131 EALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEP 190 AP WN+ K+L G+PLR+ + Sbjct: 11113 AQQGAPM------------------------WNYTKYLCDRSGLPLRKLEPGCSMDALRQ 11220 Query: 191 DIEALL 196 IE++L Sbjct: 11221 SIESVL 11238 >Lt_contig1507 | | 1 to 8331 Length = 8331 Score = 27.7 bits (60), Expect = 5.3 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Frame = -2 Query: 84 QENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREA--LPAPSDDAT 141 +E + ++L S V P P+ + E VNG P A L+ A LP D + Sbjct: 1193 REEGDHTQVLLSAASVPPPS---PHAVSNEMQAVNGTTPMPTTAVLQNAPRLPQRGSDLS 1023 Query: 142 ALMTDPKLITWSP 154 A TD L+ WSP Sbjct: 1022 ASTTD--LLPWSP 990 >Lt_contig241 | | 1 to 2390 Length = 2390 Score = 27.7 bits (60), Expect = 5.3 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = -1 Query: 102 GGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALM 144 GG +LF VN AHP A R LP P+D T ++ Sbjct: 1295 GGCASSVLLLFLDNSVNFLDAHPTDASPRSLLPLPTDTRTQMV 1167 >Lt_contig5436 | | 1 to 1189 Length = 1189 Score = 27.3 bits (59), Expect = 7.0 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -1 Query: 12 AAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDY 56 + S+Y F + +P LG +G LLI NVAS G T Y Sbjct: 175 STMSIYDFKVNG-SDHQPYDLGQHKGHPLLIYNVASKCGFTKGGY 44 >Lt_contig7115 | | 1 to 6655 Length = 6655 Score = 27.3 bits (59), Expect = 7.0 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -3 Query: 63 QRRLGPRGLVVLGFPCNQFGHQENAK 88 +RR P G FPCNQF NA+ Sbjct: 3089 KRRCRPAGNTCDAFPCNQFAPSANAE 3012 >Lt_contig6391 | | 1 to 3420 Length = 3420 Score = 27.3 bits (59), Expect = 7.0 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 16/155 (10%) Frame = -2 Query: 23 PLAGGEPVSLGSLRGKVLLIENVAS---------LXGTTVRDYTQMNELQRRLGPRGLVV 73 P+ G+ V RG+ +E+V + G TV T+M LG + V Sbjct: 1742 PITSGDDVDNQGARGRSARVEDVGAGDYEDELSGEPGDTVDPKTRM---MASLGEYIVPV 1572 Query: 74 LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFM-------LFEKCEVNGAGAHPLF 126 + E+ + + S+ PGG P LF++ E + P+ Sbjct: 1571 VA-------DAESPIGKAVCRSVMVAVPGGNSNPAVPEAVIVENLFQR-EPYAVLSAPIP 1416 Query: 127 AFLREALPAPSDDATALMTDPKLITWSPVCRNDVA 161 A ++ +P PS + T T+ + TW + VA Sbjct: 1415 AIVKRPVPPPSSEPTKPQTETAVATWDGLMIASVA 1311 >Lt_contig1064 | | 1 to 19894 Length = 19894 Score = 27.3 bits (59), Expect = 7.0 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -1 Query: 45 VASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ 80 V SL T + + + + RRLGP GL PC++ Sbjct: 17905 VGSLRRTAILLFLSLCRMVRRLGPSGLARRSSPCHR 17798 Database: L.tarentolae/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.321 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,262,724 Number of Sequences: 7267 Number of extensions: 159297 Number of successful extensions: 800 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 766 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 796 length of query: 203 length of database: 10,532,946 effective HSP length: 95 effective length of query: 108 effective length of database: 9,842,581 effective search space: 1062998748 effective search space used: 1062998748 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.9 bits)