TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete (203 letters) Database: L.donovani_BPK282A1/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_26 85 4e-17 contig_36 69 2e-12 contig_30 31 0.53 contig_33 30 1.5 contig_27 29 2.6 contig_34 28 4.5 contig_23 28 4.5 contig_09 28 5.9 >contig_26 Length = 1058259 Score = 84.7 bits (208), Expect = 4e-17 Identities = 65/192 (33%), Positives = 82/192 (42%) Frame = -3 Query: 5 RLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQR 64 R AAAAA A S+Y F + +P LG +G LLI NVAS G T Y L Sbjct: 232534 RRAAAAAQASSIYDFKVNG-SDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATTLYN 232358 Query: 65 RLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHP 124 + G VL FPCNQF QE EE+ R F+ F + EK VNG HP Sbjct: 232357 KYKHLGFTVLAFPCNQFAGQEPGTEEEV-KEFACTR----FKAEFPIMEKVCVNGEHEHP 232193 Query: 125 LFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQ 184 L+ +L+ + V WNF FLV DG P+ R++ Sbjct: 232192 LYHYLKSKCK------------------GTLGTTFVKWNFTAFLVDKDGHPVCRFAPGAT 232067 Query: 185 TIDIEPDIEALL 196 +IE + LL Sbjct: 232066 VSEIEKKLLPLL 232031 Score = 74.3 bits (181), Expect = 5e-14 Identities = 58/185 (31%), Positives = 76/185 (41%) Frame = -2 Query: 12 AAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGL 71 + S+Y F + +P LG +G LLI NVAS G T Y L + G Sbjct: 235223 STMSIYDFKVNG-SDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATTLYNKYKHLGF 235047 Query: 72 VVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLRE 131 VL FPCNQF QE EE+ R F+ F + EK VNG HPL+ +L+ Sbjct: 235046 TVLAFPCNQFAGQEPGTEEEV-KEFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKS 234882 Query: 132 ALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPD 191 + V WNF FLV DG P+ R++ +IE Sbjct: 234881 KCK------------------GILGTTFVKWNFTAFLVDKDGHPVCRFAPGATVSEIEKK 234756 Query: 192 IEALL 196 + LL Sbjct: 234755 LLPLL 234741 Score = 56.2 bits (134), Expect = 2e-08 Identities = 41/132 (31%), Positives = 53/132 (40%) Frame = -1 Query: 70 GLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 129 G VL FPCNQF QE EE+ R F+ F + EK VNG HPL+ +L Sbjct: 231918 GFTVLAFPCNQFAGQEPGTEEEV-KEFACTR----FKAEFPIMEKVCVNGEHEHPLYHYL 231754 Query: 130 REALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIE 189 + + V WNF FLV DG P+ R++ +IE Sbjct: 231753 KSKCK------------------GTLGTTFVKWNFTAFLVDKDGHPVCRFAPGATVFEIE 231628 Query: 190 PDIEALLSQGPS 201 + LL S Sbjct: 231627 KKLLPLLQAAAS 231592 Score = 37.0 bits (84), Expect = 0.010 Identities = 24/52 (46%), Positives = 28/52 (53%) Frame = -3 Query: 5 RLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDY 56 R AAAAA A S+Y F + +P LG +G LLI NVAS G T Y Sbjct: 232969 RRAAAAAQASSIYDFKVNG-SDHQPYDLGQHKGHPLLIYNVASKCGFTKGGY 232817 >contig_36 Length = 2713248 Score = 69.3 bits (168), Expect = 2e-12 Identities = 55/187 (29%), Positives = 74/187 (39%) Frame = -3 Query: 10 AAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPR 69 A S++ +SA + G+ V L G LI NVAS + +NE+Q+ G R Sbjct: 1242352 AVGMASIFTYSA--VQNGKTVFLQKYSGYATLIVNVASRCSLASTNIEILNEVQQAYGSR 1242179 Query: 70 GLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 129 VL FPC QF +QE N EI K F +F++ V G+ A PLF L Sbjct: 1242178 RFTVLAFPCAQFANQEPLNNTEIAQWCK------DLGLLFPVFDRVNVKGSSADPLFQML 1242017 Query: 130 REALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIE 189 R AP WN+ K+L GVP R+ + Sbjct: 1242016 RVQKGAP------------------------LWNYTKYLCDRSGVPRRKLKPGCSMDTLR 1241909 Query: 190 PDIEALL 196 IE +L Sbjct: 1241908 QSIECVL 1241888 Score = 27.3 bits (59), Expect = 7.7 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Frame = +2 Query: 29 PVSLGSLRGK-VLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENA 87 P S L G+ VL +E + + V Y L G+ LGF + F H A Sbjct: 1239401 PRSESGLSGRFVLSVERHCTSEKSNVTVYRSAFSEVYSLTGHGVKALGFDASAFMHITAA 1239580 Query: 88 KNEEILNSLKY 98 E++L SLK+ Sbjct: 1239581 WMEKVLGSLKF 1239613 >contig_30 Length = 1374157 Score = 31.2 bits (69), Expect = 0.53 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -3 Query: 124 PLFAFLREALPAPSDDATALMTDPKLITWSPVCRN 158 P AF R A P PSD + T K++ W C N Sbjct: 839294 PFQAFFRTAPPPPSDPTPSRRTHGKIVHWQQRCSN 839190 >contig_33 Length = 1453978 Score = 29.6 bits (65), Expect = 1.5 Identities = 20/52 (38%), Positives = 28/52 (53%) Frame = +3 Query: 5 RLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDY 56 R+AAAAAA+ S SA AGG V +G+ RG + L+ + T R + Sbjct: 1022532 RMAAAAAASPS--QSSAVAAAGGASVPVGAGRGTMPLLVTTSDQNDTVTRQF 1022681 >contig_27 Length = 1024085 Score = 28.9 bits (63), Expect = 2.6 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = -2 Query: 16 VYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRR 65 VY R + G VSLGSLR +V E A+ G +E+Q R Sbjct: 115405 VYKSGERGVGGAAKVSLGSLRDRV*WTEGEATKEGMCASTCAHSHEIQFR 115256 >contig_34 Length = 1750858 Score = 28.1 bits (61), Expect = 4.5 Identities = 18/33 (54%), Positives = 20/33 (60%) Frame = -3 Query: 3 AARLAAAAAAAQSVYAFSARPLAGGEPVSLGSL 35 AAR AAAAAAA SV A A AG E G++ Sbjct: 1717238 AARQAAAAAAAVSVAAAQASKTAGEEHEESGAV 1717140 Score = 27.3 bits (59), Expect = 7.7 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = +3 Query: 123 HPLFAFLREALPAPSDDATALMTDPKLITWSPV 155 HP F+FL + +PS DAT T P+L +PV Sbjct: 168051 HPFFSFLCCCVTSPSADATC-ETTPRLEVRAPV 168146 >contig_23 Length = 783272 Score = 28.1 bits (61), Expect = 4.5 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 4/77 (5%) Frame = +3 Query: 5 RLAAAAAAAQSVYAFSARPLAGGEPVSLGSLR----GKVLLIENVASLXGTTVRDYTQMN 60 R A A + A + R GG PV + SLR G+++L GT++R YT Sbjct: 449250 REAGCADGLRPPSATTKRREGGGRPVRVASLRHRRKGEIVL---ARGRCGTSLRRYT--- 449411 Query: 61 ELQRRLGPRGLVVLGFP 77 L R +VLG P Sbjct: 449412 -----LSRRAFIVLGAP 449447 >contig_09 Length = 588727 Score = 27.7 bits (60), Expect = 5.9 Identities = 15/25 (60%), Positives = 17/25 (68%) Frame = -3 Query: 3 AARLAAAAAAAQSVYAFSARPLAGG 27 AAR A AAA AQ+ A +R LAGG Sbjct: 308867 AARCALAAAVAQAQSALRSRVLAGG 308793 Database: L.donovani_BPK282A1/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.321 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,135,546 Number of Sequences: 36 Number of extensions: 187920 Number of successful extensions: 1077 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 991 Number of HSP's gapped (non-prelim): 254 length of query: 203 length of database: 10,814,999 effective HSP length: 95 effective length of query: 108 effective length of database: 10,811,579 effective search space: 1167650532 effective search space used: 1167650532 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.9 bits)