TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Homo sapiens # Complete
         (203 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338241592|gb|AFNH01002369.1| Gregarina niphandrodes asmbl.311...    28   1.6  
gi|338241155|gb|AFNH01002589.1| Gregarina niphandrodes asmbl.331...    28   2.1  
gi|338242483|gb|AFNH01001923.1| Gregarina niphandrodes asmbl.270...    28   2.1  
gi|338240731|gb|AFNH01002800.1| Gregarina niphandrodes asmbl.351...    27   4.6  
gi|338240563|gb|AFNH01002884.1| Gregarina niphandrodes asmbl.359...    27   6.1  

>gi|338241592|gb|AFNH01002369.1| Gregarina niphandrodes asmbl.3113,
            whole genome shotgun sequence
          Length = 8238

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 5    RLAAAAAAAQSVYAFSARPLAGGEPV-SLGSLRGKVLLIENVAS 47
            RL AAA +A SV     RP+  G PV + GS  GK + IE++ S
Sbjct: 1244 RLTAAARSAGSV---RGRPVGKGRPVGASGSAHGKSMGIESMGS 1122


>gi|338241155|gb|AFNH01002589.1| Gregarina niphandrodes asmbl.3316,
            whole genome shotgun sequence
          Length = 40236

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 160  VAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 196
            + WNF KFLV   G  ++ +  R   + +E DI+  L
Sbjct: 4865 IGWNFGKFLVTNQGKDVKYFGPRTGPMAMEDDIKKAL 4975


>gi|338242483|gb|AFNH01001923.1| Gregarina niphandrodes asmbl.2704,
             whole genome shotgun sequence
          Length = 26843

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +2

Query: 27    GEPVSLGSLRGKVLLIENVASLXGTT--VRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ 84
             G  VS G+L   +  I   A+  GT       T+M   + R+GPRG    GF    FGH+
Sbjct: 12062 GRAVSHGALGVVLF*ISTYAAARGTDGIAAAPTKMVGPRERVGPRGFGPRGFGHRGFGHR 12241


>gi|338240731|gb|AFNH01002800.1| Gregarina niphandrodes asmbl.3516,
             whole genome shotgun sequence
          Length = 16958

 Score = 26.9 bits (58), Expect = 4.6
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 149   LITWSPV-CRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDI 188
             L+ W  + CR    W+   F +GP  +PL R  R  Q+ ++
Sbjct: 14883 LLRWELLRCRWSTLWS-AGFCIGPQSIPLSRSPRSLQSFEL 14764


>gi|338240563|gb|AFNH01002884.1| Gregarina niphandrodes asmbl.3593,
             whole genome shotgun sequence
          Length = 32507

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
 Frame = +1

Query: 114   KCEVNGAGAHPLFAFLREALPAPSDDATALMTDP-------KLITWSPVCRNDVAWN 163
             + +V GA A P  + +    P+P   +T     P         + W+P+C N + WN
Sbjct: 13351 RAKVVGA*AWPA*SCVSSTPPSPL*SSTPCWNPPC*NPPC*NPLCWNPLCWNPLCWN 13521


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.321    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,387,149
Number of Sequences: 3680
Number of extensions: 77794
Number of successful extensions: 350
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of query: 203
length of database: 5,120,956
effective HSP length: 90
effective length of query: 113
effective length of database: 4,789,756
effective search space: 541242428
effective search space used: 541242428
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)