TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete (203 letters) Database: F.cylindrus/genome.fa 271 sequences; 80,540,407 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_3 59 6e-09 scaffold_13 55 8e-08 scaffold_57 53 4e-07 scaffold_15 48 1e-05 scaffold_6 48 1e-05 scaffold_5 47 3e-05 scaffold_50 45 8e-05 scaffold_161 28 8.1 >scaffold_3 Length = 3437899 Score = 58.9 bits (141), Expect = 6e-09 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 1/97 (1%) Frame = +2 Query: 27 GEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLV-VLGFPCNQFGHQE 85 GEP+ + +G+V ++ NVAS G T Y + +L + + +L FPC+QFGHQE Sbjct: 1604627 GEPIEFNTFKGQVTVVVNVASECGYTDSHYRSLVKLWSSVKHTNQINILAFPCDQFGHQE 1604806 Query: 86 NAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGA 122 +EILN + G E F + EK +VNG A Sbjct: 1604807 PGSGKEILN---FAVQEYGVE--FTMMEKIDVNGNSA 1604902 >scaffold_13 Length = 1481013 Score = 55.1 bits (131), Expect = 8e-08 Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 2/174 (1%) Frame = +2 Query: 27 GEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQEN 86 G +S+ +GKV+ NVAS G T R Y L ++ + L +L FP +FG+QE Sbjct: 562484 GSTISMAESKGKVIYATNVASQ*GATQRGYKLFESLGKKYSSKELTILAFPSQEFGNQEF 562663 Query: 87 AKNEEILN-SLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMT 145 N+EI + +LK P FE +L V G A ++ ++R+ ++ + Sbjct: 562664 GTNQEISSFALKKNFP---FESVGVLLTLGSVKGTTASNIWKYMRD------NNISNNSK 562816 Query: 146 DPKLITWSPVCRNDVAWNFE-KFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 198 DP+ WNF +LV G + ++E DIE L+ + Sbjct: 562817 DPR-------------WNFSTSYLVSKSG-------KVSIPTNVEKDIETLMKE 562918 >scaffold_57 Length = 346956 Score = 52.8 bits (125), Expect = 4e-07 Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 1/173 (0%) Frame = +3 Query: 27 GEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQEN 86 G +S+ +GKV+ NVAS G T R Y L ++ L +L FP +FG+QE Sbjct: 83595 GSTISMAESKGKVIYATNVASQ*GATQRGYKLFEALGKKYSSTELTILAFPSQEFGNQEF 83774 Query: 87 AKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTD 146 N+EI S ++ FE L V G A ++ ++R+ ++++ D Sbjct: 83775 GTNQEI--SSFAMKKNFPFESVGKLMTLGSVKGTTASTIWKYMRD------NNSSNNSKD 83930 Query: 147 PKLITWSPVCRNDVAWNFE-KFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 198 P WNF +LV G + ++E DIE L+ + Sbjct: 83931 P-------------TWNFSTSYLVSKSG-------KVSIPTNVEKDIETLMKE 84029 >scaffold_15 Length = 1348792 Score = 48.1 bits (113), Expect = 1e-05 Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 2/170 (1%) Frame = -1 Query: 33 GSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRG-LVVLGFPCNQFGHQENAKNEE 91 G + K +L+ N+ +D +M L + G G V+ P +Q G+ E ++ Sbjct: 1321969 GFSKCKCILVSNMKEDDPIARKDIPEMISLASKYGRDGQFAVILSPTDQ-GYYEPDTSQL 1321793 Query: 92 ILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLIT 151 I L G G P +L +K + G A P + +L+ P+ Sbjct: 1321792 IRLKLAS-EYGYGINPATILTDKVNMLGKTALPFWRWLQSNCRTPAG------------- 1321655 Query: 152 WSPVCRNDVAWNFEKFLV-GPDGVPLRRYSRRFQTIDIEPDIEALLSQGP 200 V NFEKFLV G G+PLRRY R+++ I+ DIEA+++ P Sbjct: 1321654 -----LGRVEGNFEKFLVDGRTGLPLRRYPRKYKPSAIKNDIEAIIAGRP 1321520 >scaffold_6 Length = 2967614 Score = 47.8 bits (112), Expect = 1e-05 Identities = 46/154 (29%), Positives = 63/154 (40%), Gaps = 5/154 (3%) Frame = +3 Query: 50 GTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVR-PGGGFEPN 108 G T R+Y Q L R G L +LGFP +FG QE K+EEI K PG Sbjct: 1657533 GATKREYAQFASLHERWGGDKLSILGFPSREFGWQEFEKDEEIQEFAKSKNFPG------ 1657694 Query: 109 FMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFE-KF 167 +L + ++ G A ++ F ++ A +D WNF KF Sbjct: 1657695 -ILMKLGKIKGDEAPEVWKFFKDETGA----------------------SDPMWNFRGKF 1657805 Query: 168 LVGPDG---VPLRRYSRRFQTIDIEPDIEALLSQ 198 LV +G VP D+E DIE L+ + Sbjct: 1657806 LVSKNGEVSVP----------TDLEADIERLMEE 1657877 >scaffold_5 Length = 3184085 Score = 46.6 bits (109), Expect = 3e-05 Identities = 47/164 (28%), Positives = 68/164 (41%), Gaps = 1/164 (0%) Frame = +2 Query: 36 RGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNS 95 +GKV+ NVAS G T R+Y + L + L +L FP +FG QE +EEI Sbjct: 1088678 QGKVVYATNVASQ*GLTQREYERFAALGEKYDDSQLQILAFPSQEFGGQEFGSDEEI--- 1088848 Query: 96 LKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPV 155 G + +L + V G A ++ LR+A TD Sbjct: 1088849 ---AAFAAGQKFPGILLKLDSVVGDTAPGVWKHLRDA------------TD--------- 1088956 Query: 156 CRNDVAWNFE-KFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 198 +D WNF+ K+LV G T D+E D+E L+ + Sbjct: 1088957 -SSDPGWNFDSKYLVSKTG------EVSVPTTDVEDDVEKLIGE 1089067 Score = 46.6 bits (109), Expect = 3e-05 Identities = 38/143 (26%), Positives = 59/143 (41%) Frame = -2 Query: 56 YTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKC 115 Y ELQ++ G G VL FP F QE NEEI++ + P + +F LF Sbjct: 1313152 YIYKAELQKKYGSEGFSVLAFPIKDFS-QELGSNEEIISFMDENFP----QVDFPLFS-- 1312994 Query: 116 EVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVP 175 ++ +P++ L + P N + WNF KFL+ +G Sbjct: 1312993 -LSSLKENPVYQKLHKQKPD----------------------NHIKWNFYKFLIDWNGQV 1312883 Query: 176 LRRYSRRFQTIDIEPDIEALLSQ 198 + Y ++ + I IE LL + Sbjct: 1312882 VEFYDKKVSPMQISDQIEQLLDE 1312814 >scaffold_50 Length = 420730 Score = 45.1 bits (105), Expect = 8e-05 Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 1/164 (0%) Frame = +3 Query: 36 RGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNS 95 +GKV+ NVAS G T R+Y + L + L +L FP +FG QE +EE+ Sbjct: 47097 QGKVVYATNVASQ*GLTQREYERFAALGEKYDDSQLQILAFPSQEFGGQEFGSDEEV--- 47267 Query: 96 LKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPV 155 G F +L + V G ++ LR+A TD Sbjct: 47268 -AAFAAGQNFPG--ILLKLGSVVGDTCPAVWKHLRDA------------TD--------- 47375 Query: 156 CRNDVAWNFE-KFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 198 +D WNF+ K+LV G T D+E D+E L+ + Sbjct: 47376 -SSDPGWNFDSKYLVSKTG------EVSVPTADVEDDVEKLIGE 47486 Score = 41.6 bits (96), Expect = 0.001 Identities = 37/143 (25%), Positives = 59/143 (41%) Frame = -3 Query: 56 YTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKC 115 Y ELQ++ G G VL FP F +QE NEEI++ + P + +F LF Sbjct: 247553 YIYKAELQKKYGSEGFSVLAFPIKDF-NQELGSNEEIISFMDENFP----QVDFPLF--- 247398 Query: 116 EVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVP 175 ++ +P++ L + P N + NF KFL+ +G Sbjct: 247397 SLSSLKENPVYHKLHKQKP----------------------DNHIKGNFYKFLIDWNGQV 247284 Query: 176 LRRYSRRFQTIDIEPDIEALLSQ 198 + Y ++ + I IE LL + Sbjct: 247283 VEFYDKKVSPMQISDQIEQLLGE 247215 >scaffold_161 Length = 9846 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Frame = +3 Query: 172 DGVPLRRYSRRFQTIDIEPD---IEALLSQG 199 DG P R+Y +RF +D E D IEA L+ G Sbjct: 1992 DGQPKRKYKKRFTFVDNEVDMDKIEARLNNG 2084 Database: F.cylindrus/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 80,540,407 Number of sequences in database: 271 Lambda K H 0.321 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,068,146 Number of Sequences: 271 Number of extensions: 226796 Number of successful extensions: 861 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 25 Number of HSP's that attempted gapping in prelim test: 718 Number of HSP's gapped (non-prelim): 295 length of query: 203 length of database: 26,846,802 effective HSP length: 101 effective length of query: 102 effective length of database: 26,819,431 effective search space: 2735581962 effective search space used: 2735581962 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)