TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete (203 letters) Database: A.laibachii_Nc14/genome.fa 3816 sequences; 32,740,139 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|325182752|emb|FR824077.1| Albugo laibachii Nc14, genomic cont... 137 5e-36 gi|325184927|emb|FR824116.1| Albugo laibachii Nc14, genomic cont... 108 2e-24 gi|325185083|emb|FR824119.1| Albugo laibachii Nc14, genomic cont... 91 7e-19 gi|325186653|emb|FR824160.1| Albugo laibachii Nc14, genomic cont... 88 5e-18 gi|325182478|emb|FR824073.1| Albugo laibachii Nc14, genomic cont... 67 1e-11 gi|325187621|emb|FR824191.1| Albugo laibachii Nc14, genomic cont... 51 6e-07 gi|325189739|emb|FR824273.1| Albugo laibachii Nc14, genomic cont... 51 6e-07 >gi|325182752|emb|FR824077.1| Albugo laibachii Nc14, genomic contig CONTIG_32_NC14_v4_147300_209 Length = 147300 Score = 137 bits (346), Expect(2) = 5e-36 Identities = 71/136 (52%), Positives = 85/136 (62%), Gaps = 8/136 (5%) Frame = -1 Query: 39 VLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKY 98 V+LI NVAS T ++Y ++N L ++ LV++G PCNQFGHQEN EEIL SLKY Sbjct: 135483 VILIVNVASHCNATTKEYIELNRLAQQYPE--LVIIGCPCNQFGHQENLNGEEILTSLKY 135310 Query: 99 VRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDAT--------ALMTDPKLI 150 +RPG F PNF L EK EVNGA AHPL+ LR +LP PSD T P I Sbjct: 135309 IRPGNNFTPNFELTEKIEVNGAKAHPLYNHLRLSLPFPSDRTLIDDMAKPGGFYTHPMRI 135130 Query: 151 TWSPVCRNDVAWNFEK 166 W P+ R DV+WNFEK Sbjct: 135129 VWMPISRTDVSWNFEK 135082 Score = 30.8 bits (68), Expect(2) = 5e-36 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -3 Query: 167 FLVGPDGVPLRRYSRRFQTIDIEPDIEALL 196 FL+ DG+P +RYS R + I D+E LL Sbjct: 135028 FLIDRDGIPYKRYSPRSSPMLIVKDLECLL 134939 >gi|325184927|emb|FR824116.1| Albugo laibachii Nc14, genomic contig CONTIG_71_NC14_v4_96997_236 Length = 96997 Score = 108 bits (271), Expect = 2e-24 Identities = 63/168 (37%), Positives = 90/168 (53%) Frame = +2 Query: 30 VSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKN 89 +S+ + +GKVLLI NV+S+ G T +YT + L + +GL VL FPCNQF +QE + Sbjct: 5825 ISMSNYKGKVLLIVNVSSMCGLTPANYTDLVALDEKYRDQGLQVLAFPCNQFANQEPGTH 6004 Query: 90 EEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKL 149 EEI+ +K ++ F FEK +VNGA A P+F +L+ LP Sbjct: 6005 EEIMEFVKQ------YKCTFPFFEKADVNGAKARPVFMYLKAKLPGSFG----------- 6133 Query: 150 ITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLS 197 N V WNF KFLV DG P +RY+ + + E +I+ LL+ Sbjct: 6134 --------NFVKWNFTKFLVDRDGKPHKRYAPKDPPLSFEDEIKTLLA 6253 >gi|325185083|emb|FR824119.1| Albugo laibachii Nc14, genomic contig CONTIG_74_NC14_v4_95633_241 Length = 95633 Score = 90.5 bits (223), Expect = 7e-19 Identities = 57/172 (33%), Positives = 86/172 (50%) Frame = +2 Query: 27 GEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQEN 86 G VS+ +GKV+L+ NV+S G T Y ++ +L + + L +LGFPCN F +E Sbjct: 42371 GHSVSMS*YKGKVILVVNVSSNCGLTPIHYPELVQLDDKYRDQVLQILGFPCN*FAGEEP 42550 Query: 87 AKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTD 146 +E IL+ +K + +F L EK +V+G A P+F FL+ LP D Sbjct: 42551 GTHEVILDFVKQ------YNVHFPLLEKADVSGFDARPVFTFLKAKLPRVYGDF------ 42694 Query: 147 PKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 198 V WN KFL+ +G P++RY+ R + E DI+ LL + Sbjct: 42695 -------------VKWNLTKFLIDHNGNPIKRYAPRDAQLSFESDIKDLLEK 42811 >gi|325186653|emb|FR824160.1| Albugo laibachii Nc14, genomic contig CONTIG_115_NC14_v4_74376_238 Length = 74376 Score = 87.8 bits (216), Expect = 5e-18 Identities = 55/182 (30%), Positives = 83/182 (45%) Frame = -1 Query: 15 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVL 74 S Y S L E +++ +GKV+L+ NVA+ ++ + L + +GL +L Sbjct: 10566 SFYELSDMALGTKEIITMDRYKGKVVLVVNVATKSNVATVNFQDLVYLHDKYHAQGLAIL 10387 Query: 75 GFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALP 134 FPCNQFG E +I N+ + F FEK +VNGA A P+F FL+ LP Sbjct: 10386 AFPCNQFGGNEPGSATDIANA------ASQYTATFQFFEKGDVNGAEARPVFNFLKAKLP 10225 Query: 135 APSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEA 194 + W+F KFL+ +G P+ RY+ + +EP I+ Sbjct: 10224 -------------------DTFGQFIKWDFAKFLIDREGNPVSRYAPKQAPKSLEPSIKK 10102 Query: 195 LL 196 LL Sbjct: 10101 LL 10096 >gi|325182478|emb|FR824073.1| Albugo laibachii Nc14, genomic contig CONTIG_28_NC14_v4_152595_242 Length = 152595 Score = 66.6 bits (161), Expect = 1e-11 Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 1/173 (0%) Frame = +2 Query: 27 GEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ-E 85 G +S+ GKVLL+ NVA+ + + ++ EL R ++ FPC QFG E Sbjct: 15212 GNFISMKQFAGKVLLLVNVATRDPQALVQFRRLVELALRYQGENFQIIAFPCRQFGKDLE 15391 Query: 86 NAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMT 145 EE + + K +E F + ++ +VNG A PLF L P P T Sbjct: 15392 YGSIEETVQACK------EYEVCFPVMQQQDVNGPFARPLFIHLNRECPGPLGAFT---- 15541 Query: 146 DPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 198 WNF KFLV G+ RY+ ++ I +LL + Sbjct: 15542 ---------------EWNFTKFLVDSQGIVRERYASNIPPTELVDGIVSLLEE 15655 >gi|325187621|emb|FR824191.1| Albugo laibachii Nc14, genomic contig CONTIG_146_NC14_v4_62822_155 Length = 62822 Score = 50.8 bits (120), Expect = 6e-07 Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 27/214 (12%) Frame = -1 Query: 11 AAAQSVYAFSARPLAGGEPVSLGSLR-GKVLLIENVASLXGTTVRDYT--QMNELQRRLG 67 A +QS Y F + + G EPV L + R V L+ NVAS G ++Y Q+N++ + Sbjct: 15164 AESQSAYDFHVKDIKG-EPVHLLTYRKSPVWLVVNVASACGYADQNYKELQVNQITAKDP 14988 Query: 68 PRGLVVLGFP------CNQFGHQENA--------------KNEEILNSLKYVRPG----G 103 ++ + + CN ++ ++E++ + R G Sbjct: 14987 SNCILDIVYQISRSRTCNSCISLQSIQFSGIQIE*GNPLIRSEKVRRHISTFRKGTFTLS 14808 Query: 104 GFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWN 163 P+ +L + VNG A P F FL + + +TD D+ WN Sbjct: 14807 NGHPHSVLC*QILVNGPNADPFFKFLTKK-------QSGFITD------------DIKWN 14685 Query: 164 FEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLS 197 F KFL+ GVP++RY + +DI+ DI+ L+ Sbjct: 14684 FTKFLI-VQGVPVKRYGTSTRPLDIDSDIQEALA 14586 >gi|325189739|emb|FR824273.1| Albugo laibachii Nc14, genomic contig CONTIG_228_NC14_v4_42414_133 Length = 42414 Score = 50.8 bits (120), Expect = 6e-07 Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 27/214 (12%) Frame = +3 Query: 11 AAAQSVYAFSARPLAGGEPVSLGSLR-GKVLLIENVASLXGTTVRDYT--QMNELQRRLG 67 A +QS Y F + + G EPV L + R V L+ NVAS G ++Y Q+N++ + Sbjct: 25566 AESQSAYDFHVKDIKG-EPVHLLTYRKSPVWLVVNVASACGYADQNYKELQVNQITAKDP 25742 Query: 68 PRGLVVLGFP------CNQFGHQENA--------------KNEEILNSLKYVRPG----G 103 ++ + + CN ++ ++E++ + R G Sbjct: 25743 SNCILDIVYQISRSRTCNSCISLQSIQFSGIQIE*GNPLIRSEKVRRHISTFRKGTFTLS 25922 Query: 104 GFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWN 163 P+ +L + VNG A P F FL + + +TD D+ WN Sbjct: 25923 NGHPHSVLC*QILVNGPNADPFFKFLTKK-------QSGFITD------------DIKWN 26045 Query: 164 FEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLS 197 F KFL+ GVP++RY + +DI+ DI+ L+ Sbjct: 26046 FTKFLI-VQGVPVKRYGTSTRPLDIDSDIQEALA 26144 Database: A.laibachii_Nc14/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,740,139 Number of sequences in database: 3816 Lambda K H 0.321 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,268,898 Number of Sequences: 3816 Number of extensions: 103153 Number of successful extensions: 419 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 201 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 181 Number of HSP's gapped (non-prelim): 285 length of query: 203 length of database: 10,913,379 effective HSP length: 95 effective length of query: 108 effective length of database: 10,550,859 effective search space: 1139492772 effective search space used: 1139492772 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.9 bits)