TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|298566227|ref|NP_001177288.1| disulfide bond formation
protein A [Ciona intestinalis]
         (214 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr.8                                                        31   0.41 
T.congo.pschr.11                                                       29   2.0  

>T.congo.pschr.8
          Length = 2451971

 Score = 31.2 bits (69), Expect = 0.41
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = -3

Query: 133     VETVSTVAATCGLNREEVKSFISDESNLAAVKRKAAQWSANGVSGVPYFIINDCPVFSGA 192
               V T S+ A TCG   E V    S  S+ +A+    A WSA  +S   +   +    +S  
Sbjct: 2450697 VSTSSSSAVTCGSRLERVWELFSTRSSRSAMPAFIATWSACALSKSSHNFFSTARRWSIQ 2450518

Query: 193     QEPAAF 198
                 P+A+
Sbjct: 2450517 SAPSAY 2450500


>T.congo.pschr.11
          Length = 4797796

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -1

Query: 44      PFLLRPNMPLEGIAKQGDFGPHTPGAQRLINVGRKVGVEFAFKQPRYPYTLFGHCAL 100
               PF++   +    + ++GD  P+ P  + +INV    G  + FKQ  +P+T     AL
Sbjct: 2281222 PFIINSKLKPCLLNREGDDVPNEP--RFIINVSAMEGQFYRFKQVTHPHTNMAKAAL 2281058



 Score = 28.1 bits (61), Expect = 3.5
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = +3

Query: 59      QGDFGPHTPGAQRLINVGRKVGVEFAFKQPRYPYTLFGHCALEFAIKKDPSGSIQTQ 115
               Q  + PH P A +L              + R PYT+ GH AL   IK   S +  TQ
Sbjct: 3702999 QVTYSPHIPSAGKL--------------ELRQPYTVTGHVALP*GIKAADSNTYFTQ 3703127


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,862,107
Number of Sequences: 11
Number of extensions: 81094
Number of successful extensions: 316
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 102
length of query: 214
length of database: 7,429,315
effective HSP length: 93
effective length of query: 121
effective length of database: 7,428,292
effective search space: 898823332
effective search space used: 898823332
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)