TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|298566227|ref|NP_001177288.1| disulfide bond formation
protein A [Ciona intestinalis]
         (214 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.311 of Sphaeroforma arctica JP610                          145   9e-35
supercont1.24 of Sphaeroforma arctica JP610                           135   6e-32
supercont1.142 of Sphaeroforma arctica JP610                           42   0.001
supercont1.505 of Sphaeroforma arctica JP610                           30   5.6  
supercont1.29 of Sphaeroforma arctica JP610                            29   7.3  

>supercont1.311 of Sphaeroforma arctica JP610
          Length = 90105

 Score =  145 bits (365), Expect = 9e-35
 Identities = 74/200 (37%), Positives = 116/200 (58%)
 Frame = +2

Query: 3     KFLHIRVVSDIMXPWCWVGKRNLETAMKASENEYKFKVTWEPFLLRPNMPLEGIAKQGDF 62
             K + + VVSDI+ P+CW+GKR+LE A+  +++++   V W PF LR   P+EG  K  D 
Sbjct: 32264 KTILVEVVSDIVCPYCWIGKRHLEAAINETKDKFNVHVRWYPFQLRSETPIEGTLKSPDT 32443

Query: 63    GPHTPGAQRLINVGRKVGVEFAFKQPRYPYTLFGHCALEFAIKKDPSGSIQTQLQESLFK 122
               +    Q +  +G+KVG++F  K  R P T+  H  +  A  K  S  +Q ++QE LF+
Sbjct: 32444 PTNPRVGQNMRMMGQKVGIDFTGKTDRTPNTIHAHNLMHLAFGKGGS-VLQNKVQEKLFQ 32620

Query: 123   SYFTDGEYPDVETVSTVAATCGLNREEVKSFISDESNLAAVKRKAAQWSANGVSGVPYFI 182
             +YFTDG + D +TV  +    G++R+  + +++D +  A  K  A   +  GV GVP F+
Sbjct: 32621 AYFTDGVFLDAQTVIDIGVAAGMDRDGTQRYVTDPAMCAKTKSDAHTNAMRGVHGVPTFM 32800

Query: 183   INDCPVFSGAQEPAAFQNIF 202
             +N   VFSGAQ   +F  +F
Sbjct: 32801 VNGEVVFSGAQGAQSFIRVF 32860


>supercont1.24 of Sphaeroforma arctica JP610
          Length = 228622

 Score =  135 bits (341), Expect = 6e-32
 Identities = 71/203 (34%), Positives = 120/203 (59%), Gaps = 1/203 (0%)
 Frame = -1

Query: 1     MSKFLHIRVVSDIMXPWCWVGKRNLETAMKASENEYKFKVTWEPFLLRPNMPLEGIAKQG 60
             M+K +++ VVSD + P+C+VGK++LE A+KA  +E    V W P++L+P++P EGIA   
Sbjct: 40213 MAKVVYVEVVSDHICPFCYVGKKHLEEAIKACGDEVDVHVRWLPYMLKPDVPTEGIAVGK 40034

Query: 61    DFGPHTPGAQRLINVGRKVGVEFAFKQPRYPYTLFGHCALEFAIKKDPSGSIQTQLQESL 120
               G +    + L N+G+KVG++F  K  + P T   H    +A+ ++     QT +QE L
Sbjct: 40033 KSGGNKD--KTLANMGKKVGIKFTGKASKTPNTTMAHSLKHYAL-EELGSEAQTTMQEKL 39863

Query: 121   FKSYFTDGEY-PDVETVSTVAATCGLNREEVKSFISDESNLAAVKRKAAQWSANGVSGVP 179
             FKS+FT G +  DV+ +  +A  CGL+ E+ + +I  +    + +++  ++   G+S VP
Sbjct: 39862 FKSHFTSGAFLGDVDVLVRIAKECGLDGEQSREYILSKEAAKSTQKELDKYKKLGISSVP 39683

Query: 180   YFIINDCPVFSGAQEPAAFQNIF 202
              +++N      GA+ P AF N F
Sbjct: 39682 SYVMNGSFALKGAESPEAFVNAF 39614


>supercont1.142 of Sphaeroforma arctica JP610
          Length = 135076

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -3

Query: 18    CWVGKRNLETAMKASENE---YKFKVTWEPFLLRPNMP 52
             C+VG R L+TAM    N+   Y F VTW P++L P +P
Sbjct: 83285 CYVGSRRLKTAMDRFRNKQPAYDFAVTWRPYMLNPTLP 83172


>supercont1.505 of Sphaeroforma arctica JP610
          Length = 66328

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -3

Query: 155   SDESNLAAVKRKAA-QWSANGVSGVPYFIINDCPVF 189
             S +SNL A+K  AA + S   +SG+ YF++N  P+F
Sbjct: 65372 SPKSNLLALKPAAAGKDSCRNMSGLEYFLVNRPPLF 65265


>supercont1.29 of Sphaeroforma arctica JP610
          Length = 216198

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 11    SDIMXPWCWVGKRNLETAMKASENEYKFKVTWEPF 45
             S I+  WC VGK  +E  +     + K   TWE F
Sbjct: 34446 SMILPTWCLVGKT*VENMLHLLSEKEKLMYTWEEF 34550


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,755,740
Number of Sequences: 15618
Number of extensions: 354721
Number of successful extensions: 1318
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 872
length of query: 214
length of database: 40,529,447
effective HSP length: 105
effective length of query: 109
effective length of database: 38,889,557
effective search space: 4238961713
effective search space used: 4238961713
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)