TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|298566227|ref|NP_001177288.1| disulfide bond formation
protein A [Ciona intestinalis]
         (214 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_5                                                        30   3.2  
PHYCAscaffold_29                                                       28   9.3  

>PHYCAscaffold_5
          Length = 1593284

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 20/78 (25%), Positives = 40/78 (51%)
 Frame = -1

Query: 137   STVAATCGLNREEVKSFISDESNLAAVKRKAAQWSANGVSGVPYFIINDCPVFSGAQEPA 196
             ST++    L+ +   SF++  SN  A+     Q S++G S +   + +  P+FS +  PA
Sbjct: 89654 STLSGCTPLSAQRFSSFLN--SNTLALSASNVQ-SSSGESALIMTVASSRPMFSSSSSPA 89484

Query: 197   AFQNIFAKVAEKYPMPSQ 214
             A   + A++     +P++
Sbjct: 89483 AVALVGAELLGAVALPNE 89430


>PHYCAscaffold_29
          Length = 707326

 Score = 28.1 bits (61), Expect = 9.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 185    DCPVFSGAQEPAAFQNIFAKVAEKYPMP 212
              DCPV SGA+    F+    K    YPMP
Sbjct: 692237 DCPVSSGAKTLPRFETSATKCRCHYPMP 692154


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,018,763
Number of Sequences: 917
Number of extensions: 211069
Number of successful extensions: 838
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 198
length of query: 214
length of database: 21,341,249
effective HSP length: 100
effective length of query: 114
effective length of database: 21,249,549
effective search space: 2422448586
effective search space used: 2422448586
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)