TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|298566227|ref|NP_001177288.1| disulfide bond formation
protein A [Ciona intestinalis]
         (214 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig5400  |  | 1 to 5692                                          30   1.5  
Lt_contig112  |  | 1 to 21543                                          28   3.5  
Lt_contig3917  |  | 1 to 4066                                          28   5.9  
Lt_contig4813  |  | 1 to 4570                                          27   7.7  

>Lt_contig5400  |  | 1 to 5692
          Length = 5692

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = +2

Query: 17  WCWVGKRNLETAMKASENEYK-----FKVTWEPFLLRPNMP 52
           WCW   R   TA+K +  EY+     ++  WEP    P  P
Sbjct: 470 WCWTRHRRHTTALKNTHGEYENVPDGYR*QWEPTDGVPQQP 592


>Lt_contig112  |  | 1 to 21543
          Length = 21543

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 44    PFLLRPNMPLEGIAKQGDFGPHTPGAQRLINVGRKVGVEFAFKQPRYPYTLFGHCAL 100
             PF+L   + +    ++GD  P  P  + +INV    G  + FKQ  +P+T     AL
Sbjct: 15251 PFILNGRLKVCLKDREGDALPSEP--RFIINVSAMEGQFYRFKQTTHPHTNMAKAAL 15087


>Lt_contig3917  |  | 1 to 4066
          Length = 4066

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
 Frame = -1

Query: 21   GKRNLETAMKASENEYK--------FKVTWEPFLLRPNMPLEG 55
            GK +++T  + SE+ ++          V WE  LL+PNM + G
Sbjct: 1747 GKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPG 1619


>Lt_contig4813  |  | 1 to 4570
          Length = 4570

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = -2

Query: 116 LQESLFKSYFTDGEYPDVETVSTVAATCGLNREEVKSFISD----ESNLAAVKRKAAQWS 171
           + ++L+++Y TDG  P  +   T A T     +EVK +  +    E NLA++KRK A+  
Sbjct: 810 MAKALYENY-TDGHRPVNQRQFTSARTA---TDEVKDYHRERDHLEGNLASLKRKIAKDE 643

Query: 172 AN 173
            N
Sbjct: 642 EN 637


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,551,320
Number of Sequences: 7267
Number of extensions: 114983
Number of successful extensions: 468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of query: 214
length of database: 10,532,946
effective HSP length: 95
effective length of query: 119
effective length of database: 9,842,581
effective search space: 1171267139
effective search space used: 1171267139
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)