TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|298566227|ref|NP_001177288.1| disulfide bond formation
protein A [Ciona intestinalis]
         (214 letters)

Database: L.donovani_BPK282A1/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_36                                                              28   6.4  
contig_35                                                              28   6.4  
contig_29                                                              28   6.4  
contig_16                                                              28   6.4  

>contig_36
          Length = 2713248

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
 Frame = +3

Query: 21     GKRNLETAMKASENEYK--------FKVTWEPFLLRPNMPLEG 55
              GK +++T  + SE+ ++          V WE  LL+PNM + G
Sbjct: 474453 GKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPG 474581


>contig_35
          Length = 2113966

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 141     ATCGLNREEVKSFISDESNLAAVKRKAAQWSANGVSGVPYFIINDCPVFSGAQEPAA 197
               A+ G+NR  V++ ++ E +  A   KAA+W     +  P    +  P  S + + +A
Sbjct: 1917977 ASTGVNRLRVRTMMATEEDRPAFAAKAARWRRRSGARYPVAATHPRPPHSASFQSSA 1917807


>contig_29
          Length = 1258350

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 123   SYFTDGEYPDVETVSTVAATCGLNREEVKSFISDESNLAAVKRKAAQ 169
             S  T  +YPDV T  +         E +   + DES  AAV+R+AA+
Sbjct: 65634 SALTAEDYPDVATAVS---------ETMSELLQDESIKAAVRRRAAE 65521


>contig_16
          Length = 698406

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +2

Query: 116    LQESLFKSYFTDGEYPDVETVSTVAATCGLNREEVKSFISD----ESNLAAVKRKAAQWS 171
              + ++L+++Y TDG  P  +   T A T     +EVK +  +    E NLA++KRK A+  
Sbjct: 649559 MAKALYENY-TDGRRPANQRQFTSARTA---TDEVKDYHRERDHLEGNLASLKRKIAKDE 649726

Query: 172    AN 173
               N
Sbjct: 649727 EN 649732


  Database: L.donovani_BPK282A1/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,776,214
Number of Sequences: 36
Number of extensions: 120512
Number of successful extensions: 503
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 66
length of query: 214
length of database: 10,814,999
effective HSP length: 96
effective length of query: 118
effective length of database: 10,811,543
effective search space: 1275762074
effective search space used: 1275762074
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)