TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|298566227|ref|NP_001177288.1| disulfide bond formation protein A [Ciona intestinalis] (214 letters) Database: G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|338242235|gb|AFNH01002047.1| Gregarina niphandrodes asmbl.281... 28 2.3 gi|338240417|gb|AFNH01002958.1| Gregarina niphandrodes asmbl.366... 28 3.0 gi|338241145|gb|AFNH01002594.1| Gregarina niphandrodes asmbl.332... 28 3.0 gi|338240521|gb|AFNH01002905.1| Gregarina niphandrodes asmbl.361... 27 3.9 gi|338240413|gb|AFNH01002960.1| Gregarina niphandrodes asmbl.366... 27 5.1 gi|338242900|gb|AFNH01001715.1| Gregarina niphandrodes asmbl.251... 27 5.1 gi|338239598|gb|AFNH01003367.1| Gregarina niphandrodes asmbl.714... 27 6.6 gi|338240676|gb|AFNH01002828.1| Gregarina niphandrodes asmbl.354... 27 6.6 >gi|338242235|gb|AFNH01002047.1| Gregarina niphandrodes asmbl.2819, whole genome shotgun sequence Length = 20157 Score = 28.1 bits (61), Expect = 2.3 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = -2 Query: 24 NLETAMKASENEYKFKVTWEPFLLR-PNMPL 53 NL T M+A N + + TW PF+ R P +P+ Sbjct: 2435 NLCTCMRAHTNHFYVQTTWSPFVSRTPFVPV 2343 >gi|338240417|gb|AFNH01002958.1| Gregarina niphandrodes asmbl.3660, whole genome shotgun sequence Length = 18602 Score = 27.7 bits (60), Expect = 3.0 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +2 Query: 30 KASENEYKFKVTWEPFLLRPNMPLEGIAKQGDFGPHTPGAQRLINVGRK 78 KA+ K VT LL+P+MP E I F P + +++N+ RK Sbjct: 8906 KAAVRTQKKAVTTSAALLKPSMPSERILSLMVFPP*SHPRPKVLNIMRK 9052 >gi|338241145|gb|AFNH01002594.1| Gregarina niphandrodes asmbl.3320, whole genome shotgun sequence Length = 11721 Score = 27.7 bits (60), Expect = 3.0 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 19 WVGKRNLETAMKASENEYKFKVTWEPFLLRP 49 W+ + L + K+S +E +FKV WE LRP Sbjct: 3775 WLSNKALYVSNKSSSSESEFKVLWE--TLRP 3861 >gi|338240521|gb|AFNH01002905.1| Gregarina niphandrodes asmbl.3611, whole genome shotgun sequence Length = 33265 Score = 27.3 bits (59), Expect = 3.9 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +2 Query: 25 LETAMKASENEYKFKVTWEPFLLRPNMPLEG 55 L+T+MKAS+ VTW +L P PL G Sbjct: 11501 LKTSMKASDGSQNLAVTWTKHVLLP--PLAG 11587 >gi|338240413|gb|AFNH01002960.1| Gregarina niphandrodes asmbl.3662, whole genome shotgun sequence Length = 11135 Score = 26.9 bits (58), Expect = 5.1 Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 4/141 (2%) Frame = -2 Query: 64 PHTPGAQRLINVGRKVGVEFAFKQPRYPYTLFGHCALEFAIKKDPSGSI--QTQLQESLF 121 P + G+ R KVG F PR P+ F H FA G + Q LQ +L Sbjct: 7045 PESLGSYRSNGTAAKVGRCPQFIIPRTPFPRFSHSRFVFA------GLVINQRSLQPALL 6884 Query: 122 KSYFTDGEYPDVETVSTVAATC--GLNREEVKSFISDESNLAAVKRKAAQWSANGVSGVP 179 + F+ P V + C G+ R + + + AAV+ + G+ +P Sbjct: 6883 RKPFSLLPLPCVICFPLLPCMCVPGVQRNSAQRHCTQ*AVAAAVEEGT*LQLSTGLQLIP 6704 Query: 180 YFIINDCPVFSGAQEPAAFQN 200 + PV GA+ A ++ Sbjct: 6703 ESCVVVDPV--GAEHTAGAEH 6647 >gi|338242900|gb|AFNH01001715.1| Gregarina niphandrodes asmbl.2513, whole genome shotgun sequence Length = 8405 Score = 26.9 bits (58), Expect = 5.1 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%) Frame = -3 Query: 129 EYPDVETVSTVAATCGLNREEVKSFISDESNL----AAVKRKAAQWSANGVSGVPYFIIN 184 E +V ST A CG E +KSF++ ++ + AA K+ Q A + G Sbjct: 6372 EISEVAVSSTTGAVCGCCLEFLKSFVTPKTPVSVLHAASKQSVTQTLAQLLPG------- 6214 Query: 185 DCPVFSGAQEPAAF 198 F+GA P+ F Sbjct: 6213 ---PFAGAFRPSPF 6181 >gi|338239598|gb|AFNH01003367.1| Gregarina niphandrodes asmbl.714, whole genome shotgun sequence Length = 3089 Score = 26.6 bits (57), Expect = 6.6 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 6/29 (20%) Frame = +1 Query: 169 QWSANG------VSGVPYFIINDCPVFSG 191 QW G ++ V + II+DCP+FSG Sbjct: 658 QWELEGYVALAAITPVRHVIIHDCPLFSG 744 >gi|338240676|gb|AFNH01002828.1| Gregarina niphandrodes asmbl.3541, whole genome shotgun sequence Length = 15598 Score = 26.6 bits (57), Expect = 6.6 Identities = 11/40 (27%), Positives = 21/40 (52%) Frame = -3 Query: 128 GEYPDVETVSTVAATCGLNREEVKSFISDESNLAAVKRKA 167 GEY + + T +CGL R ++ ++ N+A ++A Sbjct: 15179 GEYVSFQIMRTARMSCGLLRITIRQVFANSGNVACRVKRA 15060 Database: G.niphandrodes/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.319 0.134 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,269,788 Number of Sequences: 3680 Number of extensions: 61030 Number of successful extensions: 241 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 237 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 241 length of query: 214 length of database: 5,120,956 effective HSP length: 90 effective length of query: 124 effective length of database: 4,789,756 effective search space: 593929744 effective search space used: 593929744 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (26.2 bits)