TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|298566227|ref|NP_001177288.1| disulfide bond formation protein A [Ciona intestinalis] (214 letters) Database: F.cylindrus/genome.fa 271 sequences; 80,540,407 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_3 80 3e-15 scaffold_10 36 0.042 scaffold_4 36 0.055 scaffold_79 30 4.0 scaffold_29 28 8.8 scaffold_21 28 8.8 scaffold_8 28 8.8 >scaffold_3 Length = 3437899 Score = 80.1 bits (196), Expect = 3e-15 Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 17/218 (7%) Frame = -1 Query: 5 LHIRVVSDIMXPWCWVGKRNLETAMKASENEYKFK-----VTWEPFLLRPNMPL-EGIAK 58 + I VVSD + PWC++GKR LE A+K + ++ +FK V W PF L P +G+ K Sbjct: 2402623 IDIDVVSDTV*PWCFIGKRRLELAIKMANDDPQFKDVDFNVIWRPFQLNAAAPKGKGVNK 2402444 Query: 59 Q----GDFGPHTPGAQ--RLINVGRKVGVEFAFKQPRYPYTLFGHCALEFAIKKDPSGSI 112 FG ++ G K G+ F++ Y F L + K+ + Sbjct: 2402443 MEMYLEKFGKSRMDTMLPQMKETGLKEGINFSY--GGYTGNTFDSHRLIWKAKEVGGIDL 2402270 Query: 113 QTQLQESLFKSYFTDGE-YPDVETVSTVAATCG--LNREEVKSFISDESN--LAAVKRKA 167 Q ++ ESLFK+YF + + D+ + A ++ VK F+ + +N +K Sbjct: 2402269 QDKVVESLFKAYFEEEKSMGDLSVLIDCANRVEGMMDDVSVKEFLEESNNGKNETLKELE 2402090 Query: 168 AQWSANGVSGVPYFIINDCPVFSGAQEPAAFQNIFAKV 205 GVSGVP+FI ND SGAQ P ++F K+ Sbjct: 2402089 EYRRVYGVSGVPFFIFNDKYSLSGAQPPDEILSVFKKL 2401976 >scaffold_10 Length = 1906272 Score = 36.2 bits (82), Expect = 0.042 Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 31/233 (13%) Frame = +3 Query: 7 IRVVSDIMXPWCWVGKRNLETAMKASENE--------YKFKVTWEPFLLRPNMP------ 52 + +VSD M P ++GK+ L A+ N+ F + P+ L P+ Sbjct: 261438 VELVSDTM*PNGYIGKKYLTKAIDQVLNDPLPGAPKPMAFSILRIPYFLEPDYKEKEVFI 261617 Query: 53 ---LEGIAKQ--GDFG-PHTPGAQRLINVGRKVGVEFAFKQPRYPYTLFGHCALEFAIKK 106 E + K+ G G + L G G+ + + T+ H ++ KK Sbjct: 261618 ETNRERLVKKWGGKRGWENQKHHHNLKGRGLDAGIPYFNLDRKTSNTMASHRLIQHLGKK 261797 Query: 107 DPSGSIQTQLQESLFKSYFTDGEYPDVETVSTVAATCGL-----------NREEVKSFIS 155 ++ + + L YF DG + + TC L +++E+ +F+ Sbjct: 261798 YGL-AVSEAVYDLLNVYYFVDGHSLN-DKPRLAKVTCELLDELLPKDKAPSKKEILNFLD 261971 Query: 156 DESNLAAVKRKAAQWSANGVSGVPYFIINDCPVFSGAQEPAAFQNIFAKVAEK 208 + A + G+SG+P FII V GA + F IF ++ ++ Sbjct: 261972 GTEGKEQILHALAALNQLGISGIPKFIIEGRTVVDGAAQSETFVEIFREIEKR 262130 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +3 Query: 156 DESNLAAVKRKAAQWSANGVSGVPYFIINDCPVFSGAQEPA 196 D++N V K + W G+S YF+ D V EPA Sbjct: 1764831 DDNNTDGVMPKGSTWRKLGISPCKYFLNTDGSVNENCTEPA 1764953 >scaffold_4 Length = 3206981 Score = 35.8 bits (81), Expect = 0.055 Identities = 48/233 (20%), Positives = 89/233 (38%), Gaps = 31/233 (13%) Frame = +2 Query: 7 IRVVSDIMXPWCWVGKRNLETA--------MKASENEYKFKVTWEPFLLRPNMP------ 52 + +VSD M P ++GK+ L A + + F + P+ L P+ Sbjct: 1190045 VELVSDTM*PNGYIGKKYLTKAIDQVLNGPLPGAPKPMAFSILRIPYFLEPDYKEKEVFI 1190224 Query: 53 ---LEGIAKQ--GDFG-PHTPGAQRLINVGRKVGVEFAFKQPRYPYTLFGHCALEFAIKK 106 E + K+ G G + L G G+ + + T+ H ++ KK Sbjct: 1190225 ETNRERLVKKWGGKRGWENQKHHHNLKGRGLDAGIPYFNLDRKTSNTMASHRLIQHLGKK 1190404 Query: 107 DPSGSIQTQLQESLFKSYFTDGEYPDVETVSTVAATCGL-----------NREEVKSFIS 155 ++ + + L YF DG + + TC L +++E+ +F++ Sbjct: 1190405 YGL-AVSEAVYDLLNVYYFVDGHSLN-DKPRLAKVTCELLDELLPKDKAPSKKEILNFLN 1190578 Query: 156 DESNLAAVKRKAAQWSANGVSGVPYFIINDCPVFSGAQEPAAFQNIFAKVAEK 208 + A + G+SG+P FII V GA + F IF ++ ++ Sbjct: 1190579 GTEGKEQILHALAALNQLGISGIPKFIIEGRTVVDGAAQSETFVEIFREIEKR 1190737 >scaffold_79 Length = 225955 Score = 29.6 bits (65), Expect = 4.0 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +2 Query: 179 PYFIINDCPVFSGAQEPAAFQN 200 P +IIN C +FS PAA+QN Sbjct: 1382 PVYIINACALFSVLSNPAAYQN 1447 >scaffold_29 Length = 747900 Score = 28.5 bits (62), Expect = 8.8 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = -2 Query: 68 GAQRLINVGRKVGVEFAFKQPRYPYTLFGH 97 G ++ VGRK+ + F+ K R+P +++ H Sbjct: 429821 GTVNIVGVGRKLIIYFSEKHTRFPNSIYAH 429732 >scaffold_21 Length = 951085 Score = 28.5 bits (62), Expect = 8.8 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 179 PYFIINDCPVFSGAQEPAAFQN 200 P +IIN C +F+ PAA+QN Sbjct: 618999 PVYIINACALFNVLSNPAAYQN 618934 >scaffold_8 Length = 2651504 Score = 28.5 bits (62), Expect = 8.8 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 10/98 (10%) Frame = +1 Query: 33 ENEYKFKVTWEPFLLRP-----NMPLEGIAKQGDFGPHTPGAQRLINVG-----RKVGVE 82 EN YK V W+P L +PL G P G Q + G +K G+ Sbjct: 266998 ENRYKMLVEWDPNALTQTDRFGRVPLNCSMVGGFNAPTIQGFQSVFEYGIRYFPKKKGIS 267177 Query: 83 FAFKQPRYPYTLFGHCALEFAIKKDPSGSIQTQLQESL 120 F +P T F ++A KK ++ ++++L Sbjct: 267178 LLFHKPNSLLTPF-----QYACKKYGGEKVKKIIKDTL 267276 Database: F.cylindrus/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 80,540,407 Number of sequences in database: 271 Lambda K H 0.319 0.134 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,297,147 Number of Sequences: 271 Number of extensions: 206664 Number of successful extensions: 748 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 679 Number of HSP's gapped (non-prelim): 143 length of query: 214 length of database: 26,846,802 effective HSP length: 102 effective length of query: 112 effective length of database: 26,819,160 effective search space: 3003745920 effective search space used: 3003745920 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.5 bits)