TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|298566227|ref|NP_001177288.1| disulfide bond formation
protein A [Ciona intestinalis]
         (214 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328866208|gb|GL883028.1| Dictyostelium fasciculatum unplaced ...    28   4.7  
gi|328871053|gb|GL883014.1| Dictyostelium fasciculatum unplaced ...    28   4.7  
gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced ...    28   4.7  
gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ...    28   6.1  

>gi|328866208|gb|GL883028.1| Dictyostelium fasciculatum unplaced genomic
             scaffold Scf_EUAJFUG02G6ADK-5, whole genome shotgun
             sequence
          Length = 378254

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
 Frame = -3

Query: 87    QPRYPYTLFGHCALE-------FAIKKDPSGSIQTQLQESLFKSYFTDGEYPDVETVSTV 139
             Q R PYT+    +L        +  ++  SG I+ +  E  + + +  G +  +  VSTV
Sbjct: 16956 QVRKPYTIMAVASLVGQIAIALYTFERSLSGDIR-KTPEEYYTNPYGGGIFYILNVVSTV 16780

Query: 140   AATCGLNREEVKSFISDESNLAAVKRKAAQWSANG 174
             A  CGL+ +           L A   K  +W A G
Sbjct: 16779 AFFCGLSIDV----------LIASSEKYTRWRAEG 16705


>gi|328871053|gb|GL883014.1| Dictyostelium fasciculatum unplaced genomic
             scaffold Scf_Dfasci-F-a-11f03.f1-5, whole genome shotgun
             sequence
          Length = 911335

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 129   EYPDVETVSTVAATCGLNREEVKSFISDESNLA 161
             +YP+   +  + AT GL ++ +K   SD  NLA
Sbjct: 16019 DYPNEAPIIDLIATIGLTKDSIKDLKSDIENLA 15921


>gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_Dfasci-G-p-12c09.r1-3, whole genome shotgun
              sequence
          Length = 1770755

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 20/80 (25%), Positives = 33/80 (41%)
 Frame = +2

Query: 60     GDFGPHTPGAQRLINVGRKVGVEFAFKQPRYPYTLFGHCALEFAIKKDPSGSIQTQLQES 119
              G +G +   + RLI++ R +   F F     P  + G CA    +KK        + Q +
Sbjct: 549569 GVYGGYIASSARLIDLVRCLSPGFIFTTSLPPAIVAGACASVSYLKKSKRERDMHKSQTN 549748

Query: 120    LFKSYFTDGEYPDVETVSTV 139
                K    +   P +ET S +
Sbjct: 549749 SLKQALRNANLPLLETASHI 549808


>gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun
               sequence
          Length = 4166812

 Score = 27.7 bits (60), Expect = 6.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 24      NLETAMKASENEYKFKVTWEPFLLRPNMPLEGIAK 58
               N   A + S+N Y+F+ TWE  +   N+ L    K
Sbjct: 3876790 NRTDAQEVSDNNYRFEKTWENVIRSNNVELYNYTK 3876894


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,666,913
Number of Sequences: 25
Number of extensions: 80023
Number of successful extensions: 319
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 42
length of query: 214
length of database: 10,339,736
effective HSP length: 96
effective length of query: 118
effective length of database: 10,337,336
effective search space: 1219805648
effective search space used: 1219805648
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)