TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|298566227|ref|NP_001177288.1| disulfide bond formation
protein A [Ciona intestinalis]
         (214 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso...    28   6.7  
gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso...    27   8.8  

>gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole
               genome shotgun sequence
          Length = 5125352

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +2

Query: 20      VGKRNLETAMKASENEYKFKVTWEPFL--LRPNMP--LEGIAKQGDFGPHTP 67
               +GK  ++T +    N+YKFK T +P    + PN+   L+ +   GD   + P
Sbjct: 2623424 LGKNAIQTTIGMKTNKYKFKHTPKPICIPINPNIDIILQAVL*NGDINNNGP 2623579


>gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6,
              whole genome shotgun sequence
          Length = 3602379

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = +2

Query: 87     QPRYPYTLFGHCALEFAIKK---DPSGSIQTQLQESLFKSYFTDGEYPDVETVSTVAATC 143
              QP YP T+ G C+ +   KK   + S      L+++L   Y +          ++ +   
Sbjct: 161360 QPSYPITIEGECSPKTFFKKMSIEFSPYQSLNLKKNLTNPYSSSSTTTYSNNPTSSSPNT 161539

Query: 144    GLNREEVKSFISDESNL 160
               LN     S I+D SNL
Sbjct: 161540 FLNNNYPNSKINDSSNL 161590


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,673,122
Number of Sequences: 6
Number of extensions: 75067
Number of successful extensions: 214
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 22
length of query: 214
length of database: 11,314,357
effective HSP length: 96
effective length of query: 118
effective length of database: 11,313,781
effective search space: 1335026158
effective search space used: 1335026158
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)