TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|298566227|ref|NP_001177288.1| disulfide bond formation
protein A [Ciona intestinalis]
         (214 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330847614|gb|ADNL01002989.1| Astrammina rara contig00538, who...    23   4.5  
gi|330848268|gb|ADNL01002335.1| Astrammina rara contig02788, who...    23   5.9  
gi|330849358|gb|ADNL01001245.1| Astrammina rara contig01464, who...    23   5.9  
gi|330848194|gb|ADNL01002409.1| Astrammina rara contig02872, who...    22   7.7  
gi|330850316|gb|ADNL01000287.1| Astrammina rara contig00298, who...    22   7.7  

>gi|330847614|gb|ADNL01002989.1| Astrammina rara contig00538,
          whole genome shotgun sequence
          Length = 1110

 Score = 23.1 bits (48), Expect = 4.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 4  FLHIRVVSDIMXP 16
          FLH+RVV+D+  P
Sbjct: 38 FLHLRVVADLFFP 76


>gi|330848268|gb|ADNL01002335.1| Astrammina rara contig02788, whole
           genome shotgun sequence
          Length = 235

 Score = 22.7 bits (47), Expect = 5.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 157 ESNLAAVKRKAAQWSANGVSGVPYFII 183
           ESN   ++ KA +W+   V   PY ++
Sbjct: 15  ESNPRPIQAKAYEWTGRNVYI*PYVVV 95


>gi|330849358|gb|ADNL01001245.1| Astrammina rara contig01464, whole
           genome shotgun sequence
          Length = 1067

 Score = 22.7 bits (47), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 66  TPGAQRLINVGRKVGVEFAFK 86
           TPG  RLI +G K+     F+
Sbjct: 193 TPGMHRLIGIGAKMDRALVFR 131


>gi|330848194|gb|ADNL01002409.1| Astrammina rara contig02872, whole
            genome shotgun sequence
          Length = 2547

 Score = 22.3 bits (46), Expect = 7.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 4    FLHIRVVSDIMXPWCWVGKRNLETAMK 30
            FLH   V   +    WVGK+N  + ++
Sbjct: 1541 FLHYLSVQKFVFLVLWVGKKNASSGVR 1621


>gi|330850316|gb|ADNL01000287.1| Astrammina rara contig00298, whole
            genome shotgun sequence
          Length = 2354

 Score = 22.3 bits (46), Expect = 7.7
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +2

Query: 122  KSYFTDGEYPDVETVSTVAATCGLNREEVKSFISDESNLAAVKRKAAQWSANGV 175
            +S F DG+   ++ ++   A    N EEV    SD +++       A   A  +
Sbjct: 1784 QSVFGDGDTETIKALNESIAETKANLEEVADAASDAADVVVTNFAEAVSEAGAI 1945


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 334,208
Number of Sequences: 3231
Number of extensions: 3681
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of query: 214
length of database: 483,365
effective HSP length: 71
effective length of query: 143
effective length of database: 253,964
effective search space: 36316852
effective search space used: 36316852
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)