TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|298566227|ref|NP_001177288.1| disulfide bond formation
protein A [Ciona intestinalis]
         (214 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325181271|emb|FR824059.1| Albugo laibachii Nc14, genomic cont...    28   3.7  
gi|325180721|emb|FR824054.1| Albugo laibachii Nc14, genomic cont...    28   4.8  
gi|325183168|emb|FR824083.1| Albugo laibachii Nc14, genomic cont...    28   4.8  
gi|325188561|emb|FR824225.1| Albugo laibachii Nc14, genomic cont...    28   4.8  

>gi|325181271|emb|FR824059.1| Albugo laibachii Nc14, genomic contig
             CONTIG_14_NC14_v4_213144_226
          Length = 213144

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 13    IMXPWCWVGKRNLETAMKASENEYKFKVT--WEPFLLRPNMPLE 54
             +  P+CW+G  +L +  +   ++   KVT  W+ F    + PL+
Sbjct: 42999 LQVPYCWIGISHLPSENRKDFDQLSIKVTAFWKSFRSMKDYPLQ 42868


>gi|325180721|emb|FR824054.1| Albugo laibachii Nc14, genomic contig
              CONTIG_9_NC14_v4_237024_240
          Length = 237024

 Score = 28.1 bits (61), Expect = 4.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 65     HTPGAQRLINVGRKVGVEFAFKQPRYPYTLFGHCALEFAI 104
              H+  +  + N GR  G+ F+   P  P   +G C   FAI
Sbjct: 167195 HSRSSSSI*NNGRSFGMAFSKFPPWLPRCRYGRCTFSFAI 167314


>gi|325183168|emb|FR824083.1| Albugo laibachii Nc14, genomic contig
             CONTIG_38_NC14_v4_136441_241
          Length = 136441

 Score = 28.1 bits (61), Expect = 4.8
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -1

Query: 150   VKSFISDESNLAAVKRKAAQWSANG 174
             +KSFI ++SN+  ++R+AAQ+   G
Sbjct: 27997 LKSFIDNKSNVKRIERRAAQFDRKG 27923


>gi|325188561|emb|FR824225.1| Albugo laibachii Nc14, genomic contig
             CONTIG_180_NC14_v4_52563_236
          Length = 52563

 Score = 28.1 bits (61), Expect = 4.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 158   SNLAAVKRKAAQWSANGVSGVPYFIINDCPVFSGAQEPAAFQNI 201
             S+ +AV RKA   +       PY I+ND PVF+  +   + Q I
Sbjct: 33283 SHSSAVLRKALYTTHI*CRSTPYTILNDLPVFANGRHLISRQEI 33152


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,530,489
Number of Sequences: 3816
Number of extensions: 93222
Number of successful extensions: 416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 301
length of query: 214
length of database: 10,913,379
effective HSP length: 96
effective length of query: 118
effective length of database: 10,547,043
effective search space: 1244551074
effective search space used: 1244551074
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)