T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:0 sec.
SCORE=89
*
BAD AVG GOOD
*
PHYCAscaffold_7 : 87
PHYCAscaffold_4 : 87
PHYCAscaffold_3 : 91
PHYCAscaffold_1 : 90
PHYCAscaffold_7 : 92
SPP00000004_1.0 : 88
cons : 89
PHYCAscaffold_7 VRS------------------------------------------
PHYCAscaffold_4 RNKKTAEVIASFNWKRIGGTTSTSFIIMILQLEMRFPCPSTKAKW
PHYCAscaffold_3 ---------------------------------------------
PHYCAscaffold_1 A--------------------------------------------
PHYCAscaffold_7 ---------------------------------------------
SPP00000004_1.0 M--------------------------------------------
cons
PHYCAscaffold_7 ----------G---------------------------------S
PHYCAscaffold_4 CWPSMCRANVVHQRTTRSFSNYTRNTRTKVWRCWRSRATSSRIRS
PHYCAscaffold_3 ---------------------------------------------
PHYCAscaffold_1 ---------------------------------------------
PHYCAscaffold_7 ---------------------------------------------
SPP00000004_1.0 -----CAARLA---------------------------------A
cons
PHYCAscaffold_7 APRR-------GKTAHNFSFR-----------------------S
PHYCAscaffold_4 LAPTRRSWSSSSTIVNGATARPVFTYLKTKLPAPTPSATERITPP
PHYCAscaffold_3 ---------------------------------------------
PHYCAscaffold_1 -------------------GR-----------------------P
PHYCAscaffold_7 ---------------------------------------------
SPP00000004_1.0 AAAA-------AQSVYAFSAR-----------------------P
cons
PHYCAscaffold_7 LIG-SKFIRLADYAGKPILIVNVASHCNSTTKAYVQLNDLAKRFP
PHYCAscaffold_4 KAGGDKEVNMEDYKGKVVLVVNVSSKCGLTPTNYPELQQLHEKYQ
PHYCAscaffold_3 --AG-NEVPMSKYKGKVVLAVNVSSKCGLTPTNYPELQQLYEKYK
PHYCAscaffold_1 LPEA-GEEAAGGLAGCVILVVNVASECGYTDKNYRELQELYEKYH
PHYCAscaffold_7 ---------------KVALVVNTASKCTH-AGQLKQLQTLHEKYS
SPP00000004_1.0 LAG-GEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLG
cons * *.:* ::: * .:
PHYCAscaffold_7 E--LVIIGCPCNQFGHQENLNGEEIYQSLRHIRPGKGFEPVFMLT
PHYCAscaffold_4 EEGLVVLGFPCNQFAGQEPGTHEEIIEFVKQ----YNYNVTFPLL
PHYCAscaffold_3 DEGLEVLAFPCNQFAGQEPGTHEEIMEFVK------QYNVTFPFF
PHYCAscaffold_1 DEGFTVLGFPCNQFGGQEPGTAEDILKFTQ-----EKYHVTFPLF
PHYCAscaffold_7 EKGLIVVAVPSNDFARQEPGDSDDVLKRYA------DFGVTFAIA
SPP00000004_1.0 PRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLF
cons : ::. *.*:*. ** ::: : : * :
PHYCAscaffold_7 EKVEVNGANAHALFNFLRITLPYPCDR------------------
PHYCAscaffold_4 EKHDVNGSNARPVFTYLKAKLPGTFEGEVARHFRQLHQVEFHQIP
PHYCAscaffold_3 EKHDVNGASARPVFTYLKTKLPGSFGDF-----------------
PHYCAscaffold_1 SKVDVNGENAHPLFRFLKKQ-------------------------
PHYCAscaffold_7 NKTPVTGTDAHPF--------------------------------
SPP00000004_1.0 EKCEVNGAGAHPLFAFLREALPAPSDDA-----------------
cons .* *.* .*:..
PHYCAscaffold_7 ---------------------------------TLLDEPMRLIWM
PHYCAscaffold_4 CGPQRRTVQALCAEGPPVVFGGHQGAAGQGAAPEALTHPFLLTLF
PHYCAscaffold_3 --------------------------------VKSLTEPHLGTTS
PHYCAscaffold_1 ---------------------------------------------
PHYCAscaffold_7 ---------------------------------------------
SPP00000004_1.0 --------------------------------TALMTDPKLITWS
cons
PHYCAscaffold_7 PVTRADVSWNFEKFLISPDGTPYKRYSPKLDFTSMIEDIKFL---
PHYCAscaffold_4 VMANSEIADNFVKFLVGRDGRLFKRYGPNDLPLSMETDIQGLLRG
PHYCAscaffold_3 PVENNWTF-------------------------------------
PHYCAscaffold_1 ---------------------------------------------
PHYCAscaffold_7 ---------------------------------------------
SPP00000004_1.0 PVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLS-
cons
PHYCAscaffold_7 --------------------L
PHYCAscaffold_4 SWGQTNAMHSATARLGGPGEH
PHYCAscaffold_3 --------------------W
PHYCAscaffold_1 --------------------L
PHYCAscaffold_7 --------------------F
SPP00000004_1.0 ---------------QGPSCA
cons