T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=96
*
 BAD AVG GOOD
*
scaffold_3_subs   :  92
scaffold_13_sub   :  97
scaffold_57_sub   :  97
scaffold_6_subs   :  95
scaffold_5_subs   :  96
scaffold_50_sub   :  95
SPP00000004_1.0   :  96
cons              :  96

scaffold_3_subs   --------------------------GEPIEFNTFKGQVTVVVNV
scaffold_13_sub   ------------------------SDGSTISMAESKGKVIYATNV
scaffold_57_sub   ------------------------SDGSTISMAESKGKVIYATNV
scaffold_6_subs   --STKLAASKKGMTSFYSLTAVT-SDGSIKKMEDFRGKVVYATNV
scaffold_5_subs   --SSRLSLLFSAESSILAFSLATAGDGSKVSMSDFKGKVVYATNV
scaffold_50_sub   --AGTLANVTDSTQSANAVVINPVYNIPPVATDDDKGKVVYATNV
SPP00000004_1.0   MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENV

cons                                                 :*:*    **


scaffold_3_subs   ASECGYTDSHYRSLVKLWSSVKHTNQINILAFPCDQFGHQEPGSG
scaffold_13_sub   ASQ-GATQRGYKLFESLGKKY-SSKELTILAFPSQEFGNQEFGTN
scaffold_57_sub   ASQ-GATQRGYKLFEALGKKY-SSTELTILAFPSQEFGNQEFGTN
scaffold_6_subs   ASK-GATKREYAQFASLHERW-GGDKLSILGFPSREFGWQEFEKD
scaffold_5_subs   ASQ-GLTQREYERFAALGEKY-DDSQLQILAFPSQEFGGQEFGSD
scaffold_50_sub   ASQ-GLTQREYERFAALGEKY-DDSQLQILAFPSQEFGGQEFGSD
SPP00000004_1.0   ASLXGTTVRDYTQMNELQRRL-GPRGLVVLGFPCNQFGHQENAKN

cons              **  * *   *  :  *         : :*.**. :** **  ..


scaffold_3_subs   KEILN----------------------------------------
scaffold_13_sub   QEI------------------------------------------
scaffold_57_sub   QEI------------------------------------------
scaffold_6_subs   EEI------------------------------------------
scaffold_5_subs   EEI------------------------------------------
scaffold_50_sub   EEV------------------------------------------
SPP00000004_1.0   EEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALP

cons              :*:                                          


scaffold_3_subs   ---------------------------------------------
scaffold_13_sub   ---------------------------------------------
scaffold_57_sub   ---------------------------------------------
scaffold_6_subs   ---------------------------------------------
scaffold_5_subs   ---------------------------------------------
scaffold_50_sub   ---------------------------------------------
SPP00000004_1.0   APSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRY

cons                                                           


scaffold_3_subs   ------------------------
scaffold_13_sub   ------------------------
scaffold_57_sub   ------------------------
scaffold_6_subs   ------------------------
scaffold_5_subs   ------------------------
scaffold_50_sub   ------------------------
SPP00000004_1.0   SRRFQTIDIEPDIEALLSQGPSCA

cons