TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74761781|sp|Q9NX07.1|TSAP1_HUMAN RecName: Full=tRNA
selenocysteine 1-associated protein 1; AltName: Full=SECp43; AltName:
Full=tRNA selenocysteine-associated protein 1
         (287 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.7943 of Sphaeroforma arctica JP610                          54   3e-07
supercont1.1106 of Sphaeroforma arctica JP610                          52   1e-06
supercont1.394 of Sphaeroforma arctica JP610                           52   2e-06

>supercont1.7943 of Sphaeroforma arctica JP610
          Length = 1326

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 28/60 (46%), Positives = 40/60 (66%)
 Frame = -1

Query: 4   SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
           +LW G+L+PYM + FIS+AF   G    +VK+I NR TG+PAGY +V +  L  A+  +H
Sbjct: 411 NLWCGELKPYMTDIFISQAFNQAGFYPHTVKMINNRNTGMPAGYWYV-YPCLLFAQTSIH 235


>supercont1.1106 of Sphaeroforma arctica JP610
          Length = 22497

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 1/178 (0%)
 Frame = +2

Query: 5     LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64
             L++G +   M E  +   F   GE V  V I++++ +G P G  FV +   A A K +  
Sbjct: 16352 LFIGQIPRDMAETDVKAVFDEFGE-VFEVVILKDKFSGQPQGCGFVSYMHKADATKAIAG 16528

Query: 65    INGKP-LPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123
             ++ K  LPG+  A + K+  +   K  D      LFVG      D+ M+ + F   Y   
Sbjct: 16529 LHDKKVLPGSANAMQVKVADSEKRKDQDKK----LFVGMTGRLADESMIKKMF-DPYGVV 16693

Query: 124   RGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 181
                 ++    G SKG GFV F    + + A+    G+  L      L V      + K
Sbjct: 16694 EEVTILKHPDGNSKGCGFVMFATREQGQSAINALNGSTTLDGATAPLVVKFADTDKDK 16867


>supercont1.394 of Sphaeroforma arctica JP610
          Length = 78326

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
 Frame = +2

Query: 49    FVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYAT------------------YGKQP 90
             FVEF     A+     +NG+ +  + P+  ++L +A                    G   
Sbjct: 18371 FVEFYSNQEADAARQALNGQIVNPSDPSNHWRLGWAQRKDNEGPRSNMGGGGMEGVGGHG 18550

Query: 91    DNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVV 129
             D   EYS+FVG+LT +V DG L  +F   YP+C+  KVV
Sbjct: 18551 DRHDEYSIFVGELTDEVTDGTLLAYFRMSYPNCKTAKVV 18667



 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 26/50 (52%), Positives = 31/50 (62%)
 Frame = +1

Query: 130   LDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179
             L   G SKGYGFV+F D+ EQ  A+T   GAVG G K +R+  A PK  R
Sbjct: 19072 LGNDGRSKGYGFVRFYDKAEQLDAITRMHGAVGCGGKILRVREATPKNPR 19221


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.317    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,397,588
Number of Sequences: 15618
Number of extensions: 352615
Number of successful extensions: 1163
Number of sequences better than 1.0e-04: 3
Number of HSP's better than  0.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 612
length of query: 287
length of database: 40,529,447
effective HSP length: 108
effective length of query: 179
effective length of database: 38,842,703
effective search space: 6952843837
effective search space used: 6952843837
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)