TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|74761781|sp|Q9NX07.1|TSAP1_HUMAN RecName: Full=tRNA selenocysteine 1-associated protein 1; AltName: Full=SECp43; AltName: Full=tRNA selenocysteine-associated protein 1 (287 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso... 71 8e-13 gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso... 62 7e-10 gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 55 8e-08 gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso... 50 2e-06 >gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 71.2 bits (173), Expect = 8e-13 Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Frame = +2 Query: 83 YATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGF 141 Y Y +P NS + SL++GDL DV D L F YPS R +V++D TG+S+GYGF Sbjct: 229592 YYYYFNKPPNS-DLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGF 229768 Query: 142 VKFTDELEQKRALTECQGAVGLGSKPVRLS 171 VKF ++E+ +AL + G + +KP++++ Sbjct: 229769 VKFASDVEKDKALIDMNGFY-INNKPIKVN 229855 Score = 50.4 bits (119), Expect = 2e-06 Identities = 37/153 (24%), Positives = 70/153 (45%) Frame = +1 Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 73 + E + F +G V ++++ R+ T Y +V + + A AE+ L +N P+ G Sbjct: 3042550 VSEQHLFEIFNQVG-LVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRG- 3042723 Query: 74 TPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT 133 K ++ ++ S ++F+ +L +D LY+ F + + KVV D Sbjct: 3042724 ---KACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTF-SAFGNILSCKVVTDDG 3042891 Query: 134 GVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 166 SKG+GFV + + +A+ + G + G K Sbjct: 3042892 NSSKGFGFVHYETQESADKAIAKVNGMMINGQK 3042990 Score = 48.5 bits (114), Expect = 6e-06 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%) Frame = +2 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 SL++GDL + + + AF +V S ++I + TGI GY FV+FA +K L Sbjct: 229631 SLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFASDVEKDKALI 229810 Query: 64 KING-----KPLPGATPA-KRFKLNYATYGKQPDNSP-EYSLFVGDLTPDVDDGMLYEFF 116 +NG KP+ P KR +T P +++V L +D+G+L + Sbjct: 229811 DMNGFYINNKPIKVNNPTHKRLNSQTSTIPDLTSTDPNNTAIYVSQLDHYIDEGVLQTYC 229990 Query: 117 V 117 + Sbjct: 229991 I 229993 >gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole genome shotgun sequence Length = 5125352 Score = 61.6 bits (148), Expect = 7e-10 Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 6/177 (3%) Frame = +3 Query: 4 SLWMGDLEPYMDENFISRAFATMGET-VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 SL++GDL ++E ++ F+ +G + S+ + R+ T GY +V F + AE+ L Sbjct: 4494960 SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERAL 4495139 Query: 63 HKIN-----GKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFV 117 +N GKP R +Y K+ N ++FV +L VD+ MLY+ F Sbjct: 4495140 DTLNYTLVHGKPC-------RIMWSYRDPTKRKTNVG--NIFVKNLEKGVDNAMLYDTFS 4495292 Query: 118 KVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 174 + + KV ++ G+SKGYG+V F ++A+ + G + LG KP+ L + + Sbjct: 4495293 S-FGNILSCKVEFEK-GISKGYGYVHFETNDSAEKAIEKVNGTLILG-KPM*LLILL 4495454 Score = 52.0 bits (123), Expect = 5e-07 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%) Frame = +3 Query: 35 IIRNRLTGIPAGYCFVEFADLATAEKCLHK-----------------------INGKPLP 71 I++N G G VEF + A+K L + INGKP+ Sbjct: 4495758 ILKNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEINGKPIT 4495937 Query: 72 GATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD 131 R K + + + + SLF+ ++ +D ++ E F K + + G K+V D Sbjct: 4495938 ----IDRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFAK-HGTIIGIKIVQD 4496102 Query: 132 QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 171 + +KG+GF+ F++ E ++AL G GSK +++S Sbjct: 4496103 ENARNKGFGFISFSEIQEAQKALDSLNGFT-FGSKQIQVS 4496219 Score = 44.7 bits (104), Expect = 8e-05 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 1/123 (0%) Frame = +3 Query: 49 FVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVD 108 ++ F +A A+K ++NGK G K +++ A + K S ++F+G++ + + Sbjct: 3479373 YIVFKQIADAKKAAKQMNGKEAFG----KHLRVDMADH-KPTKASDAKTIFIGNIPYETE 3479537 Query: 109 DGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 167 + L+ F K + +++ D T + KG+G+V F+ + A+ Q ++ G + Sbjct: 3479538 EEELFLIFDKTFGDVVSVRIIRDSHTNIGKGFGYVNFSTDETASTAI--AQKSIQFGKRE 3479711 Query: 168 VRL 170 +R+ Sbjct: 3479712 IRI 3479720 Score = 44.7 bits (104), Expect = 8e-05 Identities = 26/80 (32%), Positives = 44/80 (55%) Frame = +1 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 +L++ +L D++ + R F+ G + SVKI+R++ T + GY FV LA + ++ Sbjct: 3939823 NLYVYNLPSDADDSLLYRLFSPCG-AIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAIN 3939999 Query: 64 KINGKPLPGATPAKRFKLNY 83 ING + G T + FK Y Sbjct: 3940000 SINGVQVGGKTISVSFKK*Y 3940059 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 54.7 bits (130), Expect = 8e-08 Identities = 28/76 (36%), Positives = 46/76 (60%) Frame = -1 Query: 95 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRAL 154 ++ +FVGDL DV + ML + F+K YP+ KV+ D+ G S+G+GFV F+ + A Sbjct: 113357 DFRIFVGDLGNDVTEEMLRQAFLK-YPTFLKAKVIFDKVGKSRGFGFVSFSSSSDYISAF 113181 Query: 155 TECQGAVGLGSKPVRL 170 G +G++P++L Sbjct: 113180 NTMNGKY-IGNRPIKL 113136 >gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 50.4 bits (119), Expect = 2e-06 Identities = 29/82 (35%), Positives = 46/82 (56%) Frame = -2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 156 +LF+G+L DVD+ +L++ F + KV+ D+ GVSKG+ F+ F D E A E Sbjct: 676972 NLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSKGFAFINF-DSFEASDAAIE 676796 Query: 157 CQGAVGLGSKPVRLSVAIPKAS 178 + L +KP+ ++ A K S Sbjct: 676795 AMNSQFLCNKPISVTYARKKDS 676730 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.317 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,506,595 Number of Sequences: 6 Number of extensions: 70555 Number of successful extensions: 226 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 99 Number of HSP's gapped (non-prelim): 182 length of query: 287 length of database: 11,314,357 effective HSP length: 100 effective length of query: 187 effective length of database: 11,313,757 effective search space: 2115672559 effective search space used: 2115672559 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 103 (44.3 bits)