T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=91
*
 BAD AVG GOOD
*
EhSep2_emiliani   :  91
PHYCAscaffold_5   :  91
cons              :  91

EhSep2_emiliani   MALRSLTLLCAAAGASAGAIELTPDNFDELVLKSGKAAFIKFLAP
PHYCAscaffold_5   ---------------------LTDKNFEKEVLQSPDYWLVEFYAP

cons                                   ** .**:: **:* .  :::* **


EhSep2_emiliani   WXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGV
PHYCAscaffold_5   WCGHCKQLEPQYKAAAKKLKKHARLGVV--DA-TAQQQLAHKYQI

cons              * ****:::*::.: *..::.  :: :.  *. *. : *..** :


EhSep2_emiliani   RGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDLM
PHYCAscaffold_5   KGYPTIKEFGAKKKRPQDYRGGRTTKEIVQYVK------------

cons              :****** *.. .:. :**:***: .*: ::.:            


EhSep2_emiliani   DNCSEEQKGKLKEYIDMAPEKRTEMLETLKKELADAESTHEALLK
PHYCAscaffold_5   ---------------------------------------------

cons                                                           


EhSep2_emiliani   ELQATYKESMDKLEKLKEESAPKIKLLKAATPAPKAEGAKDEV
PHYCAscaffold_5   ------------------------------------------N

cons