T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=85
*
 BAD AVG GOOD
*
EhSep2_emiliani   :  85
PHYCAscaffold_3   :  85
cons              :  85

EhSep2_emiliani   MALRSLTLLCAAAGASAGAIELTPDNFDELVLKSGKAAFIKFLAP
PHYCAscaffold_3   ---------------------LNSESHAAMLKDASSVWLVDYYAP

cons                                   *..:..  :: .:... ::.: **


EhSep2_emiliani   WXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGV
PHYCAscaffold_3   WCPHCRQFAPAWEKAAAFYADKANINIAAVDCTQNS-EVCNNEGI

cons              *  **::: * *:. *: : *. :: ** **** ..  :*:: *:


EhSep2_emiliani   RGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDLM
PHYCAscaffold_3   MGYPTIKLYHVPPESS-----------------------------

cons               ****** :: * *..                             


EhSep2_emiliani   DNCSEEQKGKLKEYIDMAPEKRTEMLETLKKELADAESTHEALLK
PHYCAscaffold_3   ---------------------------------------------

cons                                                           


EhSep2_emiliani   ELQATYKESMDKLEKLKEESAPKIKLLKAATPAPKAEGAKDEV
PHYCAscaffold_3   ------------------------------------------E

cons