T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=90
*
 BAD AVG GOOD
*
EhSep2_emiliani   :  90
PHYCAscaffold_4   :  90
cons              :  90

EhSep2_emiliani   MALRSLTLLCAAAGASAGAIELTPDNFDELVLKSGKAAFIKFLAP
PHYCAscaffold_4   -------------------ITLTDDTFDEMVLNSGDVWLVEFYAP

cons                                 * ** *.***:**:**.. :::* **


EhSep2_emiliani   WXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGV
PHYCAscaffold_4   WCGHCKQLAPEYEQAASDLKGSVKV--AAIEAT-ANEVKASEYGI

cons              * ****:: *:::. ** ::.* **  * ::.* ..:  ..:**:


EhSep2_emiliani   RGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDLM
PHYCAscaffold_4   EGFPTIKVFGP----------------------------------

cons              .*:**** *.*                                  


EhSep2_emiliani   DNCSEEQKGKLKEYIDMAPEKRTEMLETLKKELADAESTHEALLK
PHYCAscaffold_4   ---------------------------------------------

cons                                                           


EhSep2_emiliani   ELQATYKESMDKLEKLKEESAPKIKLLKAATPAPKAEGAKDEV
PHYCAscaffold_4   -------------------------------------------

cons