T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=92
*
 BAD AVG GOOD
*
EhSep2_emiliani   :  92
PHYCAscaffold_2   :  92
cons              :  92

EhSep2_emiliani   MALRSLTLLCAAAGASAGAIELTPDNFDELVLKSGKAAFIKFLAP
PHYCAscaffold_2   ------AIACASFSAQAAPVALTEATFDHQT--SSGVWFVKFYAP

cons                    :: **: .*.*..: **  .**. .  *. . *:** **


EhSep2_emiliani   WXGHCKKMKPDWDSLASTFE-DSKKVLIADVDCTTGGKPLCEKYG
PHYCAscaffold_2   WCGHCKKLAPTIDEMSETEGLAAKDVHVAKVDCTTE-KSICERFS

cons              * *****: *  *.::.*    :*.* :*.*****  *.:**::.


EhSep2_emiliani   VRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDL
PHYCAscaffold_2   VGSYPTLK-------------------------------------

cons              * .***:*                                     


EhSep2_emiliani   MDNCSEEQKGKLKEYIDMAPEKRTEMLETLKKELADAESTHEALL
PHYCAscaffold_2   ---------------------------------------------

cons                                                           


EhSep2_emiliani   KELQATYKESMDKLEKLKEESAPKIKLLKAATPAPKAEGAKDEV
PHYCAscaffold_2   --------------------------------------------

cons