T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=93
*
 BAD AVG GOOD
*
EhSep2_emiliani   :  93
PHYCAscaffold_2   :  93
cons              :  93

EhSep2_emiliani   MALRSLTLLCAAAGASAGAIELTPDNFDELVLKSGKAAFIKFLAP
PHYCAscaffold_2   ---------------KSAVVHLSTASFEDQVLNSKDPWLIKFYAP

cons                             .:..:.*:. .*:: **:* .. :*** **


EhSep2_emiliani   WXGHCKKMKPDWDSLASTF-EDSKKVLIADVDCTTGGKPLCEKYG
PHYCAscaffold_2   WCGHCKRLAPTWNKLSRTLKENGSKVNVAKVDCTVH-RHVCSRFG

cons              * ****:: * *:.*: *: *:..** :*.****.  : :*.::*


EhSep2_emiliani   VRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDL
PHYCAscaffold_2   VNGYPSLFYIN--DGQVYRYKGGRSLPAFLDFVE-----------

cons              *.***:: *:*  * :   *******  : .*.*           


EhSep2_emiliani   MDNCSEEQKGKLKEYIDMAPEKRTEMLETLKKELADAESTHEALL
PHYCAscaffold_2   ---------------------------------------------

cons                                                           


EhSep2_emiliani   KELQATYKESMDKLEKLKEESAPKIKLLKAATPAPKAEGAKDEV
PHYCAscaffold_2   -------------------------------------------S

cons