T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=94
*
 BAD AVG GOOD
*
EhSep2_emiliani   :  94
PHYCAscaffold_1   :  94
cons              :  94

EhSep2_emiliani   MALRSLTLLCAAAGASAGAIELTPDNFDELVLKSGKAAFIKFLAP
PHYCAscaffold_1   -----------VAKAPSHVAALTESDFDAEVIQSKKHAIVEFYAP

cons                         .* *.: .  ** .:**  *::* * *:::* **


EhSep2_emiliani   WXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGV
PHYCAscaffold_1   WCGHCKSLAPTYEEVGAIFDGEENVLIAKVDATA-NTELASRYNV

cons              * ****.: * ::.:.: *:..::****.**.*: .. *..:*.*


EhSep2_emiliani   RGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDLM
PHYCAscaffold_1   KGYPTLFYFAPGSDEPEDYSNGRDRPRVNGHAQNRFGPGRNISLE

cons              :****: ** * .:* ***..**.  .:: .*:*.:*** .:.* 


EhSep2_emiliani   DNCSEEQKGKLKEYIDMAPEKRTEMLETLKKELADAESTHEALLK
PHYCAscaffold_1   DHVGEHVVGR-----------------------------------

cons              *: .*.  *:                                   


EhSep2_emiliani   ELQATYKESMDKLEKLKEESAPKIKLLKAATPAPKAEGAKDEV
PHYCAscaffold_1   ---------------------------------------REEH

cons                                                     ::*