T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=92
*
 BAD AVG GOOD
*
EhSep2_emiliani   :  92
PHYCAscaffold_1   :  92
cons              :  92

EhSep2_emiliani   MALRSLTLLCAAAGASAGAIELTPDNFDELVLKSGKAAFIKFLAP
PHYCAscaffold_1   ---------------------LTPDNFDEVVD-GSKHVLVKFFAP

cons                                   ********:*  ..* .::**:**


EhSep2_emiliani   WXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGV
PHYCAscaffold_1   WCGHCKSMAPTYETVATAFKKTSNVVVAEVDAD-NYKDLGSKFGV

cons              * ****.* * ::::*::*:.:.:*::*:**.  . * * .*:**


EhSep2_emiliani   RGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDLM
PHYCAscaffold_1   TGFPTLKYFPEGSTEPEDYKGGRGEDDFVNFLNEKA---------

cons               *:**:***   . * *******. *:: :* :::          


EhSep2_emiliani   DNCSEEQKGKLKEYIDMAPEKRTEMLETLKKELADAESTHEALLK
PHYCAscaffold_1   ---------------------------------------------

cons                                                           


EhSep2_emiliani   ELQATYKESMDKLEKLKEESAPKIKLLKAATPAPKAEGAKDEV
PHYCAscaffold_1   -------------------------------------GSNVRV

cons                                                   *:: .*