T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=80
*
 BAD AVG GOOD
*
EhSep2_emiliani   :  80
Lt_contig5998     :  80
cons              :  80

EhSep2_emiliani   MALRSLTLLCAAAGASAGAIELTPDNFDELVLKSGKAAFIKFLAP
Lt_contig5998     ------TTHAASAAEASRVVELTRDTFDSYVGGPDKYTFVLYCVK

cons                    *  .*:*. :: .:*** *.**. *  ..* :*: : . 


EhSep2_emiliani   WXGHCKKMKPDWDSLASTFE--DSKKVLIA-DVDCTTGGKPLCEK
Lt_contig5998     WSRQCKTVIQLWNRLSITQSQKELRDVFTAAYVDGD-LFPDLVKR

cons              *  :**.:   *: *: * .  : :.*: *  **       * ::


EhSep2_emiliani   YGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSV
Lt_contig5998     MNVKGFPTMMFYTPLHTEGLEYNGPRESY----------------

cons               .*:*:**: ::.* . ** :*:* *.                  


EhSep2_emiliani   DLMDNCSEEQKGKLKEYIDMAPEKRTEMLETLKKELADAESTHEA
Lt_contig5998     ---------------------------------------------

cons                                                           


EhSep2_emiliani   LLKELQATYKESMDKLEKLKEESAPKIKLLKAATPAPKAEGAKDE
Lt_contig5998     -----------------------------------------LLDS

cons                                                         *.


EhSep2_emiliani   V
Lt_contig5998     F

cons              .