T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=91
*
 BAD AVG GOOD
*
EhSep2_emiliani   :  91
scaffold_1_subs   :  91
cons              :  91

EhSep2_emiliani   MALRSLTLLCAAAGASAGAIELTPDNFDELVLKSGKAAFIKFLAP
scaffold_1_subs   ------------------AFELKKDNFKGW-LEEHEMAFVDMYAP

cons                                *:**. ***.   *:. : **:.: **


EhSep2_emiliani   WXGHCKKMKPDWDSLASTFEDSKK-VLIADVDCTTGGKPLCEKYG
scaffold_1_subs   WCVWCQRLGPTWEKFAQEVKTLKMPVGVGKLDCMQEA-DLCRDEK

cons              *   *::: * *:.:*. .:  *  * :..:**   .  **..  


EhSep2_emiliani   VRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDL
scaffold_1_subs   VMAFPTLRWYDNGKAVAPEYKMDRTVTALVGFAKR----------

cons              * .:**:::::  .  . :** .*::  *  **:.          


EhSep2_emiliani   MDNCSEEQKGKLKEYIDMAPEKRTEMLETLKKELADAESTHEALL
scaffold_1_subs   ---------------------------------------------

cons                                                           


EhSep2_emiliani   KELQATYKESMDKLEKLKEESAPKIKLLKAATPAPKAEGAKDEV
scaffold_1_subs   ------------------------------------------KL

cons                                                        ::