TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000014_1.0 # Protein # Selenoprotein H (SelH) # Homo sapiens # Complete (122 letters) Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig5150 | | 1 to 1669 29 0.60 Lt_contig168 | | 1 to 10751 28 1.0 Lt_contig1470 | | 1 to 11362 28 1.3 Lt_contig2484 | | 1 to 1470 27 2.3 Lt_contig5305 | | 1 to 9553 27 2.3 Lt_contig4980 | | 1 to 6058 27 2.3 Lt_contig4725 | | 1 to 9675 27 2.3 Lt_contig3008 | | 1 to 2060 27 2.3 Lt_contig181 | | 1 to 10246 27 2.3 Lt_contig378 | | 1 to 7633 27 3.9 Lt_contig1326 | | 1 to 15163 26 5.1 Lt_contig7004 | | 1 to 20035 26 5.1 Lt_contig4642 | | 1 to 5783 26 6.6 Lt_contig7267 | | 1 to 11434 26 6.6 Lt_contig7183 | | 1 to 9499 26 6.6 Lt_contig5811 | | 1 to 9422 25 8.6 Lt_contig4622 | | 1 to 6430 25 8.6 Lt_contig6109 | | 1 to 978 25 8.6 Lt_contig488 | | 1 to 2300 25 8.6 >Lt_contig5150 | | 1 to 1669 Length = 1669 Score = 29.3 bits (64), Expect = 0.60 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 Query: 85 RPDGSSAELWTGIKKGPPRK 104 R GSSA LWTG+ + PP K Sbjct: 610 RASGSSAALWTGLSERPPWK 551 >Lt_contig168 | | 1 to 10751 Length = 10751 Score = 28.5 bits (62), Expect = 1.0 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = -1 Query: 74 PRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQ 111 P R L P+ S L TG+++ P LK P P+ Sbjct: 2654 PVRALLHFGQLEPESSDMRLCTGLRQEAPSPLKMPSPR 2541 >Lt_contig1470 | | 1 to 11362 Length = 11362 Score = 28.1 bits (61), Expect = 1.3 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -3 Query: 38 IEHCTSURVYGRNAAALSQALRLEAPELPVKVNPTK 73 + H + R++GR++ + ALR +L V+V+P K Sbjct: 1739 VMHRAALRIFGRDSLQSAAALRCRYRQLAVRVHPDK 1632 >Lt_contig2484 | | 1 to 1470 Length = 1470 Score = 27.3 bits (59), Expect = 2.3 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +1 Query: 55 SQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWT 95 S+ LR +PV+ + + PR TLLR G+ +WT Sbjct: 103 SR*LRARCLRVPVRTSVSVPRTAPVYCTLLRIGGALGPVWT 225 >Lt_contig5305 | | 1 to 9553 Length = 9553 Score = 27.3 bits (59), Expect = 2.3 Identities = 20/55 (36%), Positives = 27/55 (49%) Frame = +3 Query: 54 LSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFP 108 +S LRLEAPE + N P LL+ SS WT +KG P+++ P Sbjct: 1524 ISSVLRLEAPERLMLTNSESP-------ALLKL--SSPAGWTVDRKGFPKRIAAP 1661 >Lt_contig4980 | | 1 to 6058 Length = 6058 Score = 27.3 bits (59), Expect = 2.3 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +2 Query: 62 APELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRK 104 AP P + P PRR + LL P + +EL + PPR+ Sbjct: 5720 APHQPRLLWPPHPRRLQRVILLLHPVHADSELGLSLPVPPPRR 5848 >Lt_contig4725 | | 1 to 9675 Length = 9675 Score = 27.3 bits (59), Expect = 2.3 Identities = 17/48 (35%), Positives = 21/48 (43%) Frame = +2 Query: 64 ELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQ 111 E PV V P R S T +R GS + W G + PP K P+ Sbjct: 3650 ETPVHVRPRGSGRAS---TGVRGSGSRSGCWRGQRVHPPDKASHQRPR 3784 >Lt_contig3008 | | 1 to 2060 Length = 2060 Score = 27.3 bits (59), Expect = 2.3 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = +1 Query: 49 RNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGI 97 R++ A AP LP NP P GS L GSS+ W G+ Sbjct: 1501 RHSVTPPHAALTAAPNLPP--NPRSPLSGSSNSALALRSGSSSVCWFGL 1641 >Lt_contig181 | | 1 to 10246 Length = 10246 Score = 27.3 bits (59), Expect = 2.3 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = +2 Query: 49 RNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGI 97 R++ A AP LP NP P GS L GSS+ W G+ Sbjct: 1877 RHSVTPPHAALTAAPNLPP--NPRSPLSGSSNSALALRSGSSSVCWFGL 2017 >Lt_contig378 | | 1 to 7633 Length = 7633 Score = 26.6 bits (57), Expect = 3.9 Identities = 17/54 (31%), Positives = 22/54 (40%) Frame = +1 Query: 55 SQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFP 108 S+A + LP + R GSF + R D S LW G + G L P Sbjct: 1576 SEAEAWKRKALPSQQTTMATRSGSFSSSCER*DSSPRGLWKGCRSGSSIALTSP 1737 >Lt_contig1326 | | 1 to 15163 Length = 15163 Score = 26.2 bits (56), Expect = 5.1 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +1 Query: 71 PTKPRRGSFEVTLLRPDGSSAELW 94 P KPRR + V LL P S E W Sbjct: 3562 PQKPRRAALCVALLNPATLSVESW 3633 >Lt_contig7004 | | 1 to 20035 Length = 20035 Score = 26.2 bits (56), Expect = 5.1 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = +1 Query: 42 TSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDG 88 T+ R+Y ++ +L L PE P +V+ + RRG + L +G Sbjct: 19828 TAVRIYAKDGVSLCARLTT*IPESPGEVSRSL*RRGCLALL*LHSEG 19968 >Lt_contig4642 | | 1 to 5783 Length = 5783 Score = 25.8 bits (55), Expect = 6.6 Identities = 13/43 (30%), Positives = 19/43 (44%) Frame = -2 Query: 31 MEEATVVIEHCTSURVYGRNAAALSQALRLEAPELPVKVNPTK 73 M T + HC + A+ S+ P +P KVNPT+ Sbjct: 2359 MRTTTPALRHCAT-------ASGTSRRTGSRIPTMPTKVNPTR 2252 >Lt_contig7267 | | 1 to 11434 Length = 11434 Score = 25.8 bits (55), Expect = 6.6 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 62 APELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFP 108 AP LP+K +PT P + RP SS++L T + P + P Sbjct: 5043 APALPLKPHPTVP*QPLIWPPSRRP*TSSSQLRTSRRSWPQLSRRSP 5183 >Lt_contig7183 | | 1 to 9499 Length = 9499 Score = 25.8 bits (55), Expect = 6.6 Identities = 8/21 (38%), Positives = 17/21 (80%) Frame = -2 Query: 100 GPPRKLKFPEPQEVVEELKKY 120 GPPR+ P+P++V ++L+++ Sbjct: 3966 GPPRRRLQPQPRQVAQKLQRH 3904 >Lt_contig5811 | | 1 to 9422 Length = 9422 Score = 25.4 bits (54), Expect = 8.6 Identities = 13/40 (32%), Positives = 16/40 (40%) Frame = +2 Query: 76 RGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQEVVE 115 R + L D S+ W G+ K PPR F VE Sbjct: 3830 RATVHARLQHCDIGSSTFWVGLTKMPPRSFDFAHSTVRVE 3949 >Lt_contig4622 | | 1 to 6430 Length = 6430 Score = 25.4 bits (54), Expect = 8.6 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +2 Query: 24 LANGGEGMEEATVVIEHCTSURVYGRNA 51 L GG GME + + C + RVY R+A Sbjct: 1865 LGRGGPGMESDALGDDLCGTGRVYRRSA 1948 >Lt_contig6109 | | 1 to 978 Length = 978 Score = 25.4 bits (54), Expect = 8.6 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -1 Query: 74 PRRGSFEVTLLRPDGSSAELWTGIKKGPP 102 P+RG + L+ DG + TGI PP Sbjct: 456 PKRGPYRPPLMVEDGRGENIVTGIYSVPP 370 >Lt_contig488 | | 1 to 2300 Length = 2300 Score = 25.4 bits (54), Expect = 8.6 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = +1 Query: 47 YGRNAAALSQALRLEAPELPVKVNPTKPRRGSFE 80 Y RN + AP +P+ PT+PR+ + E Sbjct: 22 YKRNTKDGAPLTHRRAPSIPINHAPTRPRQSACE 123 Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa Posted date: Sep 30, 2011 12:11 AM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.312 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,686,428 Number of Sequences: 7267 Number of extensions: 74114 Number of successful extensions: 300 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 299 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 300 length of query: 122 length of database: 10,532,946 effective HSP length: 87 effective length of query: 35 effective length of database: 9,900,717 effective search space: 346525095 effective search space used: 346525095 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 54 (25.4 bits)