TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000014_1.0 # Protein # Selenoprotein H (SelH) # Homo sapiens # Complete (122 letters) Database: /users/rg/didac/GENOMES/L.donovani_BPK282/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_30 32 0.13 contig_31 28 1.9 contig_26 27 3.2 contig_24 27 3.2 contig_23 27 4.2 contig_21 27 4.2 contig_08 27 4.2 contig_36 26 5.5 contig_32 26 5.5 contig_22 26 5.5 contig_07 26 5.5 contig_18 26 7.2 contig_28 25 9.4 contig_17 25 9.4 contig_09 25 9.4 >contig_30 Length = 1374157 Score = 31.6 bits (70), Expect = 0.13 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 39 EHCTSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRG 77 EHC+S + R A S + AP P+ + P PRRG Sbjct: 603620 EHCSSRGAWHRGGARQSWHVPSSAPAPPLTLTPCPPRRG 603504 >contig_31 Length = 1531288 Score = 27.7 bits (60), Expect = 1.9 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Frame = -2 Query: 40 HCTSURVYGRNAAALSQALRL--EAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGI 97 H Y ++ S+A R A LP+ + + PR T + P S+ G+ Sbjct: 191745 HSARQEAYHQHLCLQSRAHRRAPRASRLPIPLTSSSPRSLDHPSTRIHPRDSAVHRAAGM 191566 Query: 98 KKGPPRKLKFP 108 ++ PP + P Sbjct: 191565 QRPPPHSPRVP 191533 >contig_26 Length = 1058259 Score = 26.9 bits (58), Expect = 3.2 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -1 Query: 66 PVKVNPTKPRRGSFEVTLLRPDGSSAELW 94 P+KV PT+PR+G+ L P + A +W Sbjct: 932808 PLKVRPTRPRQGN----PLHPPAALAPIW 932734 >contig_24 Length = 877124 Score = 26.9 bits (58), Expect = 3.2 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -3 Query: 52 AALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDG 88 A LSQ RL+ PEL +V PT T++R G Sbjct: 559029 ALLSQQCRLQQPEL*QRVQPTMGEPRQIPCTIVRLKG 558919 Score = 26.2 bits (56), Expect = 5.5 Identities = 10/26 (38%), Positives = 13/26 (50%) Frame = +3 Query: 86 PDGSSAELWTGIKKGPPRKLKFPEPQ 111 P G + G +GPP + K P PQ Sbjct: 485850 PQGKGRRVLNGSPRGPPPRQKAPSPQ 485927 >contig_23 Length = 783272 Score = 26.6 bits (57), Expect = 4.2 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Frame = -3 Query: 47 YGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLL----RPDGSSAELWTGIKKGPP 102 Y + AA + L + AP+L V+ +PRR S EV RP G A+ K PP Sbjct: 651534 YRQAAAPRRRRLVMFAPQLKVREAQRRPRRRSVEVPCRAYA*RPVGRRAQR----KPTPP 651367 Query: 103 R 103 R Sbjct: 651366 R 651364 Score = 26.6 bits (57), Expect = 4.2 Identities = 20/69 (28%), Positives = 25/69 (36%) Frame = -3 Query: 46 VYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKL 105 VYG +L ++R+ P + P R TL R G LW PP L Sbjct: 443571 VYGCMHGSLHLSVRISVPLFFILFVPLFRFRLMLPATLARHQGPVPTLWGSPAALPPNPL 443392 Query: 106 KFPEPQEVV 114 P VV Sbjct: 443391 PMPSHLPVV 443365 Score = 25.8 bits (55), Expect = 7.2 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -2 Query: 65 LPVKVNPTKPRRGSFEVTLLRPDGSSAEL 93 LPV +P + +RG F L+R AEL Sbjct: 77335 LPVSASPRREKRGDFTTLLVRRISRLAEL 77249 >contig_21 Length = 767234 Score = 26.6 bits (57), Expect = 4.2 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +3 Query: 62 APELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGI 97 AP LP NP P GS L GSS+ W G+ Sbjct: 190494 APSLPP--NPRSPLSGSSNSALALRSGSSSVCWFGL 190595 Score = 26.6 bits (57), Expect = 4.2 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +3 Query: 62 APELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGI 97 AP LP NP P GS L GSS+ W G+ Sbjct: 190935 APSLPP--NPRSPLSGSSNSALALRSGSSSVCWFGL 191036 Score = 26.6 bits (57), Expect = 4.2 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +1 Query: 62 APELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGI 97 AP LP NP P GS L GSS+ W G+ Sbjct: 194326 APSLPP--NPRSPLSGSSNSALALRSGSSSVCWFGL 194427 >contig_08 Length = 505720 Score = 26.6 bits (57), Expect = 4.2 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Frame = -2 Query: 43 SURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVT---LLRPDGSSAELWTGIKK 99 S R R+ AALS A R +AP+ T P R S VT LR + L Sbjct: 449841 SKRSSDRSGAALSLARRADAPQRFEGQESTSPCRTSRRVTHPLALRGEWQRHSLRLQWLS 449662 Query: 100 GPPRKLKFPEPQE 112 PP + P+ Q+ Sbjct: 449661 RPPCRKDVPQTQQ 449623 >contig_36 Length = 2713248 Score = 26.2 bits (56), Expect = 5.5 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = -2 Query: 71 PTKPRRGSFE---VTLLRPDGSSAELWTGIKKGPPRKLKFP 108 P+ +RGS +TL+ + LW ++ PP ++ FP Sbjct: 846944 PSTAKRGSCAKTCLTLICSTSAEPPLWEARRRAPPERVPFP 846822 Score = 25.8 bits (55), Expect = 7.2 Identities = 13/45 (28%), Positives = 19/45 (42%) Frame = -3 Query: 30 GMEEATVVIEHCTSURVYGRNAAALSQALRLEAPELPVKVNPTKP 74 G E A V++HC + +A L EL ++NP P Sbjct: 1160182 GAELAAAVLKHCATNTHKTHQLSATLSVTELSRQELMTELNPACP 1160048 >contig_32 Length = 1559911 Score = 26.2 bits (56), Expect = 5.5 Identities = 18/60 (30%), Positives = 25/60 (41%) Frame = -2 Query: 24 LANGGEGMEEATVVIEHCTSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTL 83 LA G + + + S R + LS AL L E+P+ V+ RRG F L Sbjct: 984726 LAGASLGSQGLSAQLNAAPSVPANARARSQLSLALELLLVEVPLAVSDALYRRGCFAAAL 984547 >contig_22 Length = 704761 Score = 26.2 bits (56), Expect = 5.5 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Frame = +3 Query: 71 PTKPRRGSFEVTLLR-----PDGSSAELWTGIKKGPPRKLKFPEPQEVVEEL 117 P P RG LL+ P GSS W + G R + EVVE L Sbjct: 440733 PPPPIRGRSRAELLQWIHALPGGSSHPAWLALPIGADRMTRARSAIEVVERL 440888 >contig_07 Length = 604754 Score = 26.2 bits (56), Expect = 5.5 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -1 Query: 48 GRNAAALSQALRLEAPELPVKVNPTKPRRGS 78 GR +AA + ALR E+P P + RRGS Sbjct: 591812 GRGSAAAAVALRRTQLEIPRNGEPGQVRRGS 591720 >contig_18 Length = 735640 Score = 25.8 bits (55), Expect = 7.2 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -1 Query: 40 HCTSURVYGRNAAALSQALRLEAPELPVKVNPTKPRR 76 H R+ R+A A+ +L + PELP +PRR Sbjct: 167665 HAVRFRIQARHAEAVCASLPV*YPELPDLHRAVEPRR 167555 >contig_28 Length = 1171725 Score = 25.4 bits (54), Expect = 9.4 Identities = 25/94 (26%), Positives = 35/94 (37%) Frame = +1 Query: 28 GEGMEEATVVIEHCTSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPD 87 G GM +A +V CT LR +L V V KP G + RPD Sbjct: 649609 GCGMGDAGLVTRWCTIT------------GLRSSPTQLRVLVAGDKPTTG--DDCEGRPD 649746 Query: 88 GSSAELWTGIKKGPPRKLKFPEPQEVVEELKKYL 121 G+ W + L P P V++ ++ L Sbjct: 649747 GAGGPCWASVLSVDCMPL*APPPGAVLQRSRRRL 649848 Score = 25.4 bits (54), Expect = 9.4 Identities = 22/81 (27%), Positives = 33/81 (40%) Frame = +1 Query: 33 EATVVIEHCTSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSSAE 92 +AT + T + GR AAA ++ P V+ T+PRR S P+ S+A Sbjct: 655924 DATASLLPATHQPLRGRAAAASRDPVQCPPPA----VHRTRPRRTSHRSPPSPPEASAAP 656091 Query: 93 LWTGIKKGPPRKLKFPEPQEV 113 + PP P + V Sbjct: 656092 GPHRVLLAPPASSSSPPARRV 656154 >contig_17 Length = 671483 Score = 25.4 bits (54), Expect = 9.4 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = -3 Query: 55 SQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELW 94 ++AL +AP PV+ + +PR+ E P G W Sbjct: 561366 ARALPADAPPPPVRQSRPRPRKECAEGASAPPQGRQRRCW 561247 >contig_09 Length = 588727 Score = 25.4 bits (54), Expect = 9.4 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -1 Query: 74 PRRGSFEVTLLRPDGSSAE 92 P RG + LLRPD SSA+ Sbjct: 252235 PTRGWYAEALLRPDASSAQ 252179 Database: /users/rg/didac/GENOMES/L.donovani_BPK282/genome.fa Posted date: Oct 4, 2011 6:44 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.312 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,084,511 Number of Sequences: 36 Number of extensions: 87353 Number of successful extensions: 350 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 297 Number of HSP's gapped (non-prelim): 144 length of query: 122 length of database: 10,814,999 effective HSP length: 87 effective length of query: 35 effective length of database: 10,811,867 effective search space: 378415345 effective search space used: 378415345 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 54 (25.4 bits)