TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000014_1.0 # Protein # Selenoprotein H (SelH) # Homo sapiens # Complete (122 letters) Database: /users/rg/didac/GENOMES/S.arctica/genome.fa 15,618 sequences; 121,588,341 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.885 of Sphaeroforma arctica JP610 34 0.057 supercont1.80 of Sphaeroforma arctica JP610 28 3.1 supercont1.3076 of Sphaeroforma arctica JP610 27 6.9 >supercont1.885 of Sphaeroforma arctica JP610 Length = 33900 Score = 34.3 bits (77), Expect = 0.057 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = -3 Query: 47 YGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLK 106 Y A AL P + V +N TKPR +F + L D ++ +W G PR K Sbjct: 20614 YRSKGNAFKAALEDAFPGVDVVLNETKPRSKAFNLMLELNDKTTHTIWDGRVLNNPRSQK 20435 Query: 107 FP 108 +P Sbjct: 20434 WP 20429 >supercont1.80 of Sphaeroforma arctica JP610 Length = 168921 Score = 28.5 bits (62), Expect = 3.1 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +2 Query: 82 TLLRPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKY 120 T R G+ E+W GI+ G PR+ E+ E + Y Sbjct: 52805 TARRAQGTFGEVWAGIRTGRPRETLILHNLELCEAINGY 52921 >supercont1.3076 of Sphaeroforma arctica JP610 Length = 4114 Score = 27.3 bits (59), Expect = 6.9 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = -1 Query: 40 HCTSURVYGRNAAALSQALRLEAPELPVKVN-PTKPRRGSFEVTLLR 85 +C + + ++ L + A ++P K PT PRR S +TLL+ Sbjct: 1561 YCVCAQSHSIRSSGLPHTQKPRARKIPTKATIPTNPRRKSRPITLLK 1421 Database: /users/rg/didac/GENOMES/S.arctica/genome.fa Posted date: Sep 29, 2011 6:14 PM Number of letters in database: 121,588,341 Number of sequences in database: 15,618 Lambda K H 0.312 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,193,706 Number of Sequences: 15618 Number of extensions: 140818 Number of successful extensions: 419 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 405 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 419 length of query: 122 length of database: 40,529,447 effective HSP length: 95 effective length of query: 27 effective length of database: 39,045,737 effective search space: 1054234899 effective search space used: 1054234899 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 58 (26.9 bits)