TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000110_1.0 # Protein # Selenoprotein H (SelH) # Mus musculus # Complete (116 letters) Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig5208 | | 1 to 1761 26 5.7 Lt_contig4725 | | 1 to 9675 26 5.7 Lt_contig4667 | | 1 to 1707 26 5.7 Lt_contig7183 | | 1 to 9499 26 5.7 Lt_contig6336 | | 1 to 24468 26 5.7 Lt_contig168 | | 1 to 10751 26 5.7 Lt_contig4988 | | 1 to 11802 25 7.4 Lt_contig1131 | | 1 to 16530 25 9.7 Lt_contig7154 | | 1 to 2587 25 9.7 Lt_contig378 | | 1 to 7633 25 9.7 Lt_contig307 | | 1 to 6910 25 9.7 >Lt_contig5208 | | 1 to 1761 Length = 1761 Score = 25.8 bits (55), Expect = 5.7 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = -3 Query: 2 APHGRKRKAGAAPM--ETVDKREKLAEGATVVIEHCTSURVYGRH 44 AP G AG A E + R + AEGAT+ EH + GRH Sbjct: 853 APPGLPGDAGRAAEDHEAPNGRVQAAEGATLEDEHGSVREYSGRH 719 >Lt_contig4725 | | 1 to 9675 Length = 9675 Score = 25.8 bits (55), Expect = 5.7 Identities = 16/46 (34%), Positives = 19/46 (41%) Frame = +2 Query: 60 PVQVNPSKPRRGSFEVTLLRSDNSRVELWTGIKKGPPRKLKFPEPQ 105 PV V P R S T +R SR W G + PP K P+ Sbjct: 3656 PVHVRPRGSGRAS---TGVRGSGSRSGCWRGQRVHPPDKASHQRPR 3784 >Lt_contig4667 | | 1 to 1707 Length = 1707 Score = 25.8 bits (55), Expect = 5.7 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +1 Query: 2 APHGRKRKAGAAPM--ETVDKREKLAEGATVVIEHCTSURVYGRH 44 AP G AG A E + R + AEGAT+ EH + GRH Sbjct: 937 APPGLPGDAGRAAEDHEAPNGRVQAAEGATLEDEHGSVREYSGRH 1071 >Lt_contig7183 | | 1 to 9499 Length = 9499 Score = 25.8 bits (55), Expect = 5.7 Identities = 8/21 (38%), Positives = 17/21 (80%) Frame = -2 Query: 94 GPPRKLKFPEPQEVVEELKKY 114 GPPR+ P+P++V ++L+++ Sbjct: 3966 GPPRRRLQPQPRQVAQKLQRH 3904 >Lt_contig6336 | | 1 to 24468 Length = 24468 Score = 25.8 bits (55), Expect = 5.7 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -1 Query: 65 PSKPRRGSFEVTLLRSDNSRVELWTGIKKGPPRK 98 P P RG + LL + N W G GPPR+ Sbjct: 14889 PRAPSRGRRQRLLLPARNLPEPSWPGQLHGPPRR 14788 >Lt_contig168 | | 1 to 10751 Length = 10751 Score = 25.8 bits (55), Expect = 5.7 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = -1 Query: 68 PRRGSFEVTLLRSDNSRVELWTGIKKGPPRKLKFPEPQ 105 P R L ++S + L TG+++ P LK P P+ Sbjct: 2654 PVRALLHFGQLEPESSDMRLCTGLRQEAPSPLKMPSPR 2541 >Lt_contig4988 | | 1 to 11802 Length = 11802 Score = 25.4 bits (54), Expect = 7.4 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%) Frame = -3 Query: 3 PHGRKRKAGAAPMETVDKREKLA---EGATVVIEHC 35 PH R +AP+ET K++K A + + V+E C Sbjct: 4129 PHARSSPLSSAPIETHAKKKKYAYALQCTSFVVELC 4022 >Lt_contig1131 | | 1 to 16530 Length = 16530 Score = 25.0 bits (53), Expect = 9.7 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -1 Query: 67 KPRRGSFEVTLLRSDNSRVELWTGIKK 93 +PRRG+ V + +N RVE W G ++ Sbjct: 6093 EPRRGAH*VGIWLGNNRRVEEWGGRRR 6013 >Lt_contig7154 | | 1 to 2587 Length = 2587 Score = 25.0 bits (53), Expect = 9.7 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -1 Query: 12 AAPMETVDKREKLAEGATVVIEHCTSURVYGR 43 AAP R L EGA VV+ H S R+ R Sbjct: 2077 AAPPHPAWPRTSLCEGAPVVVVHGGSARLSAR 1982 >Lt_contig378 | | 1 to 7633 Length = 7633 Score = 25.0 bits (53), Expect = 9.7 Identities = 15/43 (34%), Positives = 18/43 (41%) Frame = +1 Query: 60 PVQVNPSKPRRGSFEVTLLRSDNSRVELWTGIKKGPPRKLKFP 102 P Q R GSF + R D+S LW G + G L P Sbjct: 1609 PSQQTTMATRSGSFSSSCER*DSSPRGLWKGCRSGSSIALTSP 1737 >Lt_contig307 | | 1 to 6910 Length = 6910 Score = 25.0 bits (53), Expect = 9.7 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 63 VNPSKPRRGSFEVTLLRSDNSRVELW 88 ++P +PRR SF TLL + R W Sbjct: 5482 LDPIRPRRPSFPYTLLSAQRYRDPQW 5405 Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa Posted date: Sep 30, 2011 12:11 AM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.314 0.132 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,689,211 Number of Sequences: 7267 Number of extensions: 58791 Number of successful extensions: 199 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 197 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 199 length of query: 116 length of database: 10,532,946 effective HSP length: 86 effective length of query: 30 effective length of database: 9,907,984 effective search space: 297239520 effective search space used: 297239520 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 53 (25.0 bits)