TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000052_1.0 # Protein # Selenoprotein H1 (SelH1) # Anopheles gambiae # Complete (131 letters) Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa 3816 sequences; 32,740,139 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|FR824127.1| Albugo laibachii Nc14, genomic contig CONTIG_82_... 32 0.16 emb|FR824503.1| Albugo laibachii Nc14, genomic contig CONTIG_461... 27 5.1 emb|FR824046.1| Albugo laibachii Nc14, genomic contig CONTIG_1_N... 26 6.7 emb|FR824642.1| Albugo laibachii Nc14, genomic contig CONTIG_638... 26 8.7 >emb|FR824127.1| Albugo laibachii Nc14, genomic contig CONTIG_82_NC14_v4_91335_233 Length = 91335 Score = 31.6 bits (70), Expect = 0.16 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +1 Query: 66 APEHKFQLVLNEDGKPRRGAFEVSIAKGKDGEKVLVWS 103 A + ++ V +ED +PR V +GK+GE VL+W+ Sbjct: 1759 AMQTRYVAVRDEDTRPRPLMLSVETFEGKEGENVLLWT 1872 >emb|FR824503.1| Albugo laibachii Nc14, genomic contig CONTIG_461_NC14_v4_15866_220 Length = 15866 Score = 26.6 bits (57), Expect = 5.1 Identities = 10/32 (31%), Positives = 17/32 (53%) Frame = -2 Query: 31 VEESQDGAYVFIEHCKSUSVFKRKAAEVHSGL 62 + +SQD +Y+F+ C K K +E + L Sbjct: 10297 INKSQDNSYIFLSGCGEGYELKEKGSEYSNSL 10202 >emb|FR824046.1| Albugo laibachii Nc14, genomic contig CONTIG_1_NC14_v4_580768_240 Length = 580768 Score = 26.2 bits (56), Expect = 6.7 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -2 Query: 60 SGLCELAPEHKFQLVLNEDGKPRRGAFEVSI 90 +G+ + P KF +LNE+GK G+F +SI Sbjct: 70188 NGVPKSNPGTKFSKMLNEEGKICGGSFTLSI 70096 >emb|FR824642.1| Albugo laibachii Nc14, genomic contig CONTIG_638_NC14_v4_8663_233 Length = 8663 Score = 25.8 bits (55), Expect = 8.7 Identities = 10/34 (29%), Positives = 20/34 (58%) Frame = -2 Query: 70 KFQLVLNEDGKPRRGAFEVSIAKGKDGEKVLVWS 103 ++ V ++D + R V +GK+GE +L+W+ Sbjct: 7201 RYVAVPDDDSRARPLMLSVKAFEGKEGENLLLWT 7100 Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa Posted date: Sep 29, 2011 5:28 PM Number of letters in database: 32,740,139 Number of sequences in database: 3816 Lambda K H 0.315 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,665,120 Number of Sequences: 3816 Number of extensions: 45394 Number of successful extensions: 120 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 120 length of query: 131 length of database: 10,913,379 effective HSP length: 88 effective length of query: 43 effective length of database: 10,577,571 effective search space: 454835553 effective search space used: 454835553 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 55 (25.8 bits)