TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelH.Monosiga_brevicollis.1 located on scaffold_24 strand + postitions 258783,258902 (85 letters) Database: /users/rg/didac/GENOMES/S.arctica/genome.fa 15,618 sequences; 121,588,341 total letters Searching..................................................done ***** No hits found ****** Database: /users/rg/didac/GENOMES/S.arctica/genome.fa Posted date: Sep 29, 2011 6:14 PM Number of letters in database: 121,588,341 Number of sequences in database: 15,618 Lambda K H 0.317 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,665,463 Number of Sequences: 15618 Number of extensions: 99858 Number of successful extensions: 303 Number of sequences better than 10.0: 0 Number of HSP's better than 10.0 without gapping: 297 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 303 length of query: 85 length of database: 40,529,447 effective HSP length: 60 effective length of query: 25 effective length of database: 39,592,367 effective search space: 989809175 effective search space used: 989809175 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (26.6 bits)