TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|323448484|gb|EGB04382.1| selenoprotein [Aureococcus anophagefferens] (113 letters) Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AFNH01002563.1| Gregarina niphandrodes asmbl.3293, whole geno... 25 5.0 gb|AFNH01001916.1| Gregarina niphandrodes asmbl.2699, whole geno... 24 8.6 >gb|AFNH01002563.1| Gregarina niphandrodes asmbl.3293, whole genome shotgun sequence Length = 27363 Score = 25.0 bits (53), Expect = 5.0 Identities = 13/49 (26%), Positives = 27/49 (55%) Frame = -2 Query: 50 KVLKALEGKAEVKINEEKPRKGAFVVSVGDTKVVELLDMKRPFPALKAL 98 KVLK+ + ++K+ + G ++ +VEL+++ RP P + A+ Sbjct: 2177 KVLKSSKPSRDLKVTHMEMLDGGKMLVCRKGGLVELIEVARPSPPIWAV 2031 >gb|AFNH01001916.1| Gregarina niphandrodes asmbl.2699, whole genome shotgun sequence Length = 4258 Score = 24.3 bits (51), Expect = 8.6 Identities = 9/34 (26%), Positives = 21/34 (61%) Frame = +3 Query: 61 VKINEEKPRKGAFVVSVGDTKVVELLDMKRPFPA 94 + ++E + + F++ VGD+ + + D++RP A Sbjct: 1668 LNLSESETLEDDFLLRVGDSDIAKFHDIRRPAAA 1769 Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa Posted date: Sep 29, 2011 11:25 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.311 0.127 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,177,536 Number of Sequences: 3680 Number of extensions: 10320 Number of successful extensions: 26 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 26 length of query: 113 length of database: 5,120,956 effective HSP length: 81 effective length of query: 32 effective length of database: 4,822,876 effective search space: 154332032 effective search space used: 154332032 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 51 (24.3 bits)