TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000043_1.0 # Protein # Selenoprotein H3 (SelH3) # Drosophila melanogaster # Complete (143 letters) Database: /users/rg/didac/GENOMES/D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole ... 28 2.3 >gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 28.1 bits (61), Expect = 2.3 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = -2 Query: 45 ECGTFFTQRIPERKFQLVKNRNGRQVPREG 74 ECG FFT ++ F+ N + + PR G Sbjct: 6846919 ECGLFFTNEPKDKVFEYFTNYSEKDFPRSG 6846830 Score = 26.2 bits (56), Expect = 8.8 Identities = 17/58 (29%), Positives = 25/58 (43%) Frame = +2 Query: 28 IYIEHTYECPIFQTKADECGTFFTQRIPERKFQLVKNRNGRQVPREGAFEIGFSQNAR 85 IY H CPI+ D TFF Q I F + K + + R+ +I + N + Sbjct: 6030548 IYCIHEKFCPIYF*SID*IFTFFCQNIHIAFFNIEKKKKKKLTGRQKKVKIV*NNNKK 6030721 Database: /users/rg/didac/GENOMES/D.discoideum_AX4/genome.fa Posted date: Sep 29, 2011 8:31 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.321 0.139 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,845,697 Number of Sequences: 6 Number of extensions: 39470 Number of successful extensions: 101 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84 Number of HSP's gapped (non-prelim): 29 length of query: 143 length of database: 11,314,357 effective HSP length: 90 effective length of query: 53 effective length of database: 11,313,817 effective search space: 599632301 effective search space used: 599632301 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (26.2 bits)