TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000043_1.0 # Protein # Selenoprotein H3 (SelH3) # Drosophila melanogaster # Complete (143 letters) Database: /users/rg/didac/GENOMES/P.capsici/genome.fa 917 sequences; 64,023,748 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PHYCAscaffold_62 28 5.2 PHYCAscaffold_39 28 5.2 PHYCAscaffold_5 28 5.2 PHYCAscaffold_77 27 6.8 PHYCAscaffold_42 27 6.8 >PHYCAscaffold_62 Length = 322952 Score = 27.7 bits (60), Expect = 5.2 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +2 Query: 32 HTYECPIFQTKADECGTFFTQRIPERKFQ 60 H CPIFQ EC T+ +PE ++Q Sbjct: 166358 HCQRCPIFQRVVREC--LSTESLPEARYQ 166438 >PHYCAscaffold_39 Length = 591971 Score = 27.7 bits (60), Expect = 5.2 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +2 Query: 32 HTYECPIFQTKADECGTFFTQRIPERKFQ 60 H CPIFQ EC T+ +PE ++Q Sbjct: 235079 HCQRCPIFQRVVREC--LSTESLPEARYQ 235159 >PHYCAscaffold_5 Length = 1593284 Score = 27.7 bits (60), Expect = 5.2 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -1 Query: 70 VPREGAFEIGFSQNARTSEHLLWSGLEKGPPRR 102 V RE AF +G+S R E L W + G P R Sbjct: 1022504 VARERAFYVGYSLVKRPLELLTWLAVSLGRPER 1022406 >PHYCAscaffold_77 Length = 232015 Score = 27.3 bits (59), Expect = 6.8 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +1 Query: 49 FFTQRIPERKFQLVKNRNGRQVPR 72 F QR+PE KFQ+ R+ R PR Sbjct: 195247 FGRQRLPEHKFQISTRRD*RNCPR 195318 >PHYCAscaffold_42 Length = 526029 Score = 27.3 bits (59), Expect = 6.8 Identities = 16/62 (25%), Positives = 25/62 (40%) Frame = +1 Query: 37 PIFQTKADECGTFFTQRIPERKFQLVKNRNGRQVPREGAFEIGFSQNARTSEHLLWSGLE 96 P++ E TQ +P+ + + N P G I + A +EH LW L Sbjct: 95857 PVYPCGKAEPWDHLTQTLPQPEALRSRESNQGYQPPAGQRRIAINL*AVLTEHFLWHNLS 96036 Query: 97 KG 98 +G Sbjct: 96037 QG 96042 Database: /users/rg/didac/GENOMES/P.capsici/genome.fa Posted date: Sep 30, 2011 12:21 AM Number of letters in database: 64,023,748 Number of sequences in database: 917 Lambda K H 0.321 0.139 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,960,795 Number of Sequences: 917 Number of extensions: 106163 Number of successful extensions: 495 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 420 Number of HSP's gapped (non-prelim): 169 length of query: 143 length of database: 21,341,249 effective HSP length: 94 effective length of query: 49 effective length of database: 21,255,051 effective search space: 1041497499 effective search space used: 1041497499 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.9 bits)