TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000042_1.0 # Protein # Selenoprotein H2 (SelH2) # Drosophila melanogaster # Complete (146 letters) Database: /users/rg/didac/GENOMES/A.rara/genome.fa 3231 sequences; 1,450,095 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ADNL01000329.1| Astrammina rara contig00349, whole genome sho... 24 1.2 gb|ADNL01000158.1| Astrammina rara contig00165, whole genome sho... 24 1.5 gb|ADNL01002680.1| Astrammina rara contig03164, whole genome sho... 23 2.6 gb|ADNL01002394.1| Astrammina rara contig02855, whole genome sho... 23 3.4 gb|ADNL01002373.1| Astrammina rara contig02828, whole genome sho... 22 5.8 gb|ADNL01002529.1| Astrammina rara contig03000, whole genome sho... 22 7.6 gb|ADNL01000265.1| Astrammina rara contig00276, whole genome sho... 21 9.9 >gb|ADNL01000329.1| Astrammina rara contig00349, whole genome shotgun sequence Length = 589 Score = 24.3 bits (51), Expect = 1.2 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +2 Query: 91 SASKVPHVDDILTPVCFALKLRDPHKESHRRMLTNLR 127 S S V D I + C ++ + DPH E R++TN + Sbjct: 83 SFSIVVMTDLINSMRCASVTIFDPHSEVTTRLITNCK 193 >gb|ADNL01000158.1| Astrammina rara contig00165, whole genome shotgun sequence Length = 2425 Score = 23.9 bits (50), Expect = 1.5 Identities = 9/18 (50%), Positives = 14/18 (77%) Frame = -1 Query: 101 ILTPVCFALKLRDPHKES 118 I+TP+CF+LK+ +K S Sbjct: 1756 IITPLCFSLKVNCIYKNS 1703 >gb|ADNL01002680.1| Astrammina rara contig03164, whole genome shotgun sequence Length = 2986 Score = 23.1 bits (48), Expect = 2.6 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +1 Query: 76 STARQSVWTGLRRMPSASKVPHVDDILTPVCFALK 110 STA + ++ GL + S ++ P V L CF L+ Sbjct: 2863 STAMRRIFGGLVSIASTAQAPFVLGKLEKQCFCLE 2967 >gb|ADNL01002394.1| Astrammina rara contig02855, whole genome shotgun sequence Length = 131 Score = 22.7 bits (47), Expect = 3.4 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = -3 Query: 53 INDKGPPEDGSFEVAIAP 70 IN K PP GSF + + P Sbjct: 66 INGKYPPSGGSFMMCLLP 13 >gb|ADNL01002373.1| Astrammina rara contig02828, whole genome shotgun sequence Length = 3691 Score = 21.9 bits (45), Expect = 5.8 Identities = 8/27 (29%), Positives = 15/27 (55%) Frame = +2 Query: 76 STARQSVWTGLRRMPSASKVPHVDDIL 102 ++ R S R+ S++PH DD++ Sbjct: 923 NSIRMSNQLATSRITCVSRIPHTDDLV 1003 >gb|ADNL01002529.1| Astrammina rara contig03000, whole genome shotgun sequence Length = 3224 Score = 21.6 bits (44), Expect = 7.6 Identities = 7/21 (33%), Positives = 11/21 (52%) Frame = +2 Query: 109 LKLRDPHKESHRRMLTNLRHN 129 + + +PH E +R L HN Sbjct: 260 ITINEPHVEKYRHSRKKLNHN 322 >gb|ADNL01000265.1| Astrammina rara contig00276, whole genome shotgun sequence Length = 893 Score = 21.2 bits (43), Expect = 9.9 Identities = 10/30 (33%), Positives = 16/30 (53%) Frame = -2 Query: 72 PTDDSTARQSVWTGLRRMPSASKVPHVDDI 101 P ++T+RQSVW A ++D+I Sbjct: 871 PLANTTSRQSVWPVTAAQCKAVIPSYIDNI 782 Database: /users/rg/didac/GENOMES/A.rara/genome.fa Posted date: Sep 29, 2011 8:09 PM Number of letters in database: 1,450,095 Number of sequences in database: 3231 Lambda K H 0.320 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 230,202 Number of Sequences: 3231 Number of extensions: 2462 Number of successful extensions: 15 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 15 length of query: 146 length of database: 483,365 effective HSP length: 67 effective length of query: 79 effective length of database: 266,888 effective search space: 21084152 effective search space used: 21084152 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 43 (21.2 bits)